carputils.model.ionic

Functions

get(*args, **kwargs) Get a class from its key string from keys()
keys() Return a list of string keys to be used with get()
summary([indent, ncolumns, padding]) Return a string summarizing the models and their parameters

Classes

ARPFIonicModel(*args, **kwargs) Describes the ARPF ionic model
AlievPanfilovIonicModel(*args, **kwargs) Describes the AlievPanfilov ionic model
BOIonicModel(*args, **kwargs) Describes the BO ionic model
COURTEMANCHEIonicModel(*args, **kwargs) Describes the COURTEMANCHE ionic model
DiFranNobleIonicModel(*args, **kwargs) Describes the DiFranNoble ionic model
ECMEIonicModel(*args, **kwargs) Describes the ECME ionic model
FHN_RMcCIonicModel(*args, **kwargs) Describes the FHN_RMcC ionic model
FOXIonicModel(*args, **kwargs) Describes the FOX ionic model
GPBIonicModel(*args, **kwargs) Describes the GPB ionic model
GPB_LandHumanIonicModel(*args, **kwargs) Describes the GPB_LandHuman ionic model
GPB_LandIonicModel(*args, **kwargs) Describes the GPB_Land ionic model
GPVatriaIonicModel(*args, **kwargs) Describes the GPVatria ionic model
GTT2_fastIonicModel(*args, **kwargs) Describes the GTT2_fast ionic model
GTT2_fast_PURKIonicModel(*args, **kwargs) Describes the GTT2_fast_PURK ionic model
GW_CANIonicModel(*args, **kwargs) Describes the GW_CAN ionic model
HHIonicModel(*args, **kwargs) Describes the HH ionic model
IION_SRCIonicModel(*args, **kwargs) Describes the IION_SRC ionic model
INADA_AVNIonicModel(*args, **kwargs) Describes the INADA_AVN ionic model
IribeIonicModel(*args, **kwargs) Describes the Iribe ionic model
JB_COURTEMANCHEIonicModel(*args, **kwargs) Describes the JB_COURTEMANCHE ionic model
KurataIonicModel(*args, **kwargs) Describes the Kurata ionic model
LMCGIonicModel(*args, **kwargs) Describes the LMCG ionic model
LR1IonicModel(*args, **kwargs) Describes the LR1 ionic model
LRDIIIonicModel(*args, **kwargs) Describes the LRDII ionic model
LRDII_FIonicModel(*args, **kwargs) Describes the LRDII_F ionic model
MBRDRIonicModel(*args, **kwargs) Describes the MBRDR ionic model
MacCannell_FbIonicModel(*args, **kwargs) Describes the MacCannell_Fb ionic model
MitchellSchaefferIonicModel(*args, **kwargs) Describes the MitchellSchaeffer ionic model
MurineMouseIonicModel(*args, **kwargs) Describes the MurineMouse ionic model
NYGRENIonicModel(*args, **kwargs) Describes the NYGREN ionic model
ORdIonicModel(*args, **kwargs) Describes the ORd ionic model
PASSIVEIonicModel(*args, **kwargs) Describes the PASSIVE ionic model
PRd2IonicModel(*args, **kwargs) Describes the PRd2 ionic model
PUGIonicModel(*args, **kwargs) Describes the PUG ionic model
PanditIonicModel(*args, **kwargs) Describes the Pandit ionic model
PassiveIonicRegion(*args, **kwargs) Describes the passive ionic model configuration
RNCIonicModel(*args, **kwargs) Describes the RNC ionic model
Rat_neonIonicModel(*args, **kwargs) Describes the Rat_neon ionic model
SCIonicModel(*args, **kwargs) Describes the SC ionic model
SHANNONIonicModel(*args, **kwargs) Describes the SHANNON ionic model
StewardIonicModel(*args, **kwargs) Describes the Steward ionic model
TT2IonicModel(*args, **kwargs) Describes the TT2 ionic model
TTIonicModel(*args, **kwargs) Describes the TT ionic model
TTREDIonicModel(*args, **kwargs) Describes the TTRED ionic model
ToRORd_dynClIonicModel(*args, **kwargs) Describes the ToRORd_dynCl ionic model
UCLA_RABIonicModel(*args, **kwargs) Describes the UCLA_RAB ionic model
UCLA_RAB_SCRIonicModel(*args, **kwargs) Describes the UCLA_RAB_SCR ionic model
WANG_NNRIonicModel(*args, **kwargs) Describes the WANG_NNR ionic model
converted_COURTEMANCHEIonicModel(*args, **kwargs) Describes the converted_COURTEMANCHE ionic model
converted_DiFranNobleIonicModel(*args, **kwargs) Describes the converted_DiFranNoble ionic model
converted_LRDII_FIonicModel(*args, **kwargs) Describes the converted_LRDII_F ionic model
converted_MBRDRIonicModel(*args, **kwargs) Describes the converted_MBRDR ionic model
converted_NYGRENIonicModel(*args, **kwargs) Describes the converted_NYGREN ionic model
converted_RNCIonicModel(*args, **kwargs) Describes the converted_RNC ionic model
converted_TT2IonicModel(*args, **kwargs) Describes the converted_TT2 ionic model
converted_UCLA_RABIonicModel(*args, **kwargs) Describes the converted_UCLA_RAB ionic model
hAMrIonicModel(*args, **kwargs) Describes the hAMr ionic model
koivumakiIonicModel(*args, **kwargs) Describes the koivumaki ionic model
koivumaki_newINaIonicModel(*args, **kwargs) Describes the koivumaki_newINa ionic model
mMSIonicModel(*args, **kwargs) Describes the mMS ionic model
class carputils.model.ionic.ARPFIonicModel(*args, **kwargs)

Describes the ARPF ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
Ca_e : float, optional
Value of Ca_e, defaults to 1.8
Ca_handling : float, optional
Value of Ca_handling, defaults to 1.0
Cl_e : float, optional
Value of Cl_e, defaults to 150.0
Cl_i : float, optional
Value of Cl_i, defaults to 30.0
g_CaB : float, optional
Value of g_CaB, defaults to 0.00035182
g_CaL : float, optional
Value of g_CaL, defaults to 0.27
g_CaT : float, optional
Value of g_CaT, defaults to 0.2
g_Cl : float, optional
Value of g_Cl, defaults to 0.3
g_ClB : float, optional
Value of g_ClB, defaults to 0.0009
g_K1 : float, optional
Value of g_K1, defaults to 0.5
g_KB : float, optional
Value of g_KB, defaults to 5e-05
g_Kr : float, optional
Value of g_Kr, defaults to 0.015583333333333
g_Ks : float, optional
Value of g_Ks, defaults to 0.011738183745949
g_Na : float, optional
Value of g_Na, defaults to 20.0
g_NaB : float, optional
Value of g_NaB, defaults to 2.97e-05
g_NaL : float, optional
Value of g_NaL, defaults to 0.0162
g_to : float, optional
Value of g_to, defaults to 0.112
I_CaP_Hill : float, optional
Value of I_CaP_Hill, defaults to 1.6
I_CaP_Kmf : float, optional
Value of I_CaP_Kmf, defaults to 0.5
I_CaP_Vmf : float, optional
Value of I_CaP_Vmf
inacamax : float, optional
Value of inacamax, defaults to 4.5
K_e_init : float, optional
Value of K_e_init, defaults to 5.4
K_i : float, optional
Value of K_i, defaults to 135.0
kmcaact : float, optional
Value of kmcaact, defaults to 0.000125
kmcai : float, optional
Value of kmcai, defaults to 0.0036
kmcao : float, optional
Value of kmcao, defaults to 1.3
kmnai1 : float, optional
Value of kmnai1, defaults to 12.3
kmnao : float, optional
Value of kmnao, defaults to 87.5
ksat : float, optional
Value of ksat, defaults to 0.27
Mg_i : float, optional
Value of Mg_i, defaults to 1.0
Na_e : float, optional
Value of Na_e, defaults to 140.0
Na_i : float, optional
Value of Na_i, defaults to 8.8
nu : float, optional
Value of nu, defaults to 0.35
P_NaK : float, optional
Value of P_NaK, defaults to 0.01833
T : float, optional
Value of T, defaults to 310.0
class carputils.model.ionic.AlievPanfilovIonicModel(*args, **kwargs)

Describes the AlievPanfilov ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
mu1 : float, optional
Value of mu1, defaults to 0.2
mu2 : float, optional
Value of mu2, defaults to 0.3
class carputils.model.ionic.BOIonicModel(*args, **kwargs)

Describes the BO ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
flags : float, optional
Value of flags
k_s : float, optional
Value of k_s
k_so : float, optional
Value of k_so
k_w_minus : float, optional
Value of k_w_minus
mode : float, optional
Value of mode
tau_fi : float, optional
Value of tau_fi
tau_o1 : float, optional
Value of tau_o1
tau_o2 : float, optional
Value of tau_o2
tau_s1 : float, optional
Value of tau_s1
tau_s2 : float, optional
Value of tau_s2
tau_si : float, optional
Value of tau_si
tau_so1 : float, optional
Value of tau_so1
tau_so2 : float, optional
Value of tau_so2
tau_v1_minus : float, optional
Value of tau_v1_minus
tau_v2_minus : float, optional
Value of tau_v2_minus
tau_v_pls : float, optional
Value of tau_v_pls, defaults to 1.4506
tau_w1_minus : float, optional
Value of tau_w1_minus
tau_w2_minus : float, optional
Value of tau_w2_minus
tau_w_inf : float, optional
Value of tau_w_inf
tau_w_pls : float, optional
Value of tau_w_pls
th_o : float, optional
Value of th_o
th_v : float, optional
Value of th_v
th_v_minus : float, optional
Value of th_v_minus
th_w : float, optional
Value of th_w
u_o : float, optional
Value of u_o, defaults to 0.0
u_s : float, optional
Value of u_s
u_so : float, optional
Value of u_so
u_u : float, optional
Value of u_u
u_w_minus : float, optional
Value of u_w_minus
w_inf_star : float, optional
Value of w_inf_star
class carputils.model.ionic.COURTEMANCHEIonicModel(*args, **kwargs)

Describes the COURTEMANCHE ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
blf_g_Kur : float, optional
Value of blf_g_Kur, defaults to 1.0
extern_Cab : float, optional
Value of extern_Cab
g_bCa : float, optional
Value of g_bCa, defaults to 0.00113
g_bNa : float, optional
Value of g_bNa, defaults to 0.000674
g_CaL : float, optional
Value of g_CaL, defaults to 0.1238
g_K1 : float, optional
Value of g_K1, defaults to 0.09
g_Kr : float, optional
Value of g_Kr, defaults to 0.0294
g_Ks : float, optional
Value of g_Ks, defaults to 0.129
g_Na : float, optional
Value of g_Na, defaults to 7.8
g_to : float, optional
Value of g_to, defaults to 0.1652
class carputils.model.ionic.DiFranNobleIonicModel(*args, **kwargs)

Describes the DiFranNoble ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
C : float, optional
Value of C
G_Na : float, optional
Value of G_Na, defaults to 750.0
kNaCa : float, optional
Value of kNaCa, defaults to 0.02
p_to : float, optional
Value of p_to, defaults to 1.0
pCaf : float, optional
Value of pCaf, defaults to 1.0
pFunny : float, optional
Value of pFunny, defaults to 1.0
pK : float, optional
Value of pK, defaults to 1.0
class carputils.model.ionic.ECMEIonicModel(*args, **kwargs)

Describes the ECME ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
Cao : float, optional
Value of Cao, defaults to 2.0
etSOD : float, optional
Value of etSOD, defaults to 0.00143
gNa : float, optional
Value of gNa, defaults to 12.8
H_KATP : float, optional
Value of H_KATP, defaults to -0.001
INaKmax : float, optional
Value of INaKmax, defaults to 3.147
j_Vt2SO2m : float, optional
Value of j_Vt2SO2m, defaults to 0.1
Ko : float, optional
Value of Ko, defaults to 5.4
Nao : float, optional
Value of Nao, defaults to 140.0
rhoF1 : float, optional
Value of rhoF1, defaults to 0.05
rhoREF : float, optional
Value of rhoREF, defaults to 0.000375
rhoREN : float, optional
Value of rhoREN, defaults to 0.0001
shunt : float, optional
Value of shunt, defaults to 0.1
sigma_KATP : float, optional
Value of sigma_KATP, defaults to 0.6
useCK : float, optional
Value of useCK
Vmuni : float, optional
Value of Vmuni, defaults to 0.0275
class carputils.model.ionic.FHN_RMcCIonicModel(*args, **kwargs)

Describes the FHN_RMcC ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
eta1 : float, optional
Value of eta1, defaults to 4.4
eta2 : float, optional
Value of eta2, defaults to 0.012
eta3 : float, optional
Value of eta3, defaults to 1.0
G : float, optional
Value of G, defaults to 1.5
vp : float, optional
Value of vp, defaults to 100.0
vth : float, optional
Value of vth, defaults to 13.0
class carputils.model.ionic.FOXIonicModel(*args, **kwargs)

Describes the FOX ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
g_Kr : float, optional
Value of g_Kr, defaults to 0.0136
g_Ks : float, optional
Value of g_Ks, defaults to 0.0245
g_Na : float, optional
Value of g_Na, defaults to 12.8
P_Ca : float, optional
Value of P_Ca, defaults to 2.26e-05
class carputils.model.ionic.GPBIonicModel(*args, **kwargs)

Describes the GPB ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
Ca_i_init : float, optional
Value of Ca_i_init, defaults to 0.08597401
Cao : float, optional
Value of Cao, defaults to 1.8
cell_type : float, optional
Value of cell_type
Cli : float, optional
Value of Cli, defaults to 15.0
Clo : float, optional
Value of Clo, defaults to 150.0
flags : float, optional
Value of flags
Ki_init : float, optional
Value of Ki_init, defaults to 120.0
Ko : float, optional
Value of Ko, defaults to 5.4
markov_iks : float, optional
Value of markov_iks, defaults to 0.0
Mgi : float, optional
Value of Mgi, defaults to 1.0
Nai_init : float, optional
Value of Nai_init, defaults to 9.06
Nao : float, optional
Value of Nao, defaults to 140.0
class carputils.model.ionic.GPB_LandHumanIonicModel(*args, **kwargs)

Describes the GPB_LandHuman ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
beta_0 : float, optional
Value of beta_0, defaults to 2.3
beta_1 : float, optional
Value of beta_1, defaults to -2.4
ca50 : float, optional
Value of ca50, defaults to 0.805
Ca_i_init : float, optional
Value of Ca_i_init, defaults to 0.08597401
Cao : float, optional
Value of Cao, defaults to 1.8
cell_type : float, optional
Value of cell_type
Cli : float, optional
Value of Cli, defaults to 15.0
Clo : float, optional
Value of Clo, defaults to 150.0
dr : float, optional
Value of dr, defaults to 0.25
flags : float, optional
Value of flags
gamma_wu : float, optional
Value of gamma_wu, defaults to 0.615
gamma_zs : float, optional
Value of gamma_zs, defaults to 0.0085
Ki_init : float, optional
Value of Ki_init, defaults to 120.0
Ko : float, optional
Value of Ko, defaults to 5.4
koff : float, optional
Value of koff, defaults to 0.1
ktm_unblock : float, optional
Value of ktm_unblock, defaults to 1.0
lengthDep : float, optional
Value of lengthDep, defaults to 0.0
markov_iks : float, optional
Value of markov_iks, defaults to 0.0
Mgi : float, optional
Value of Mgi, defaults to 1.0
mu_uw : float, optional
Value of mu_uw, defaults to 3.0
Nai_init : float, optional
Value of Nai_init, defaults to 9.06
Nao : float, optional
Value of Nao, defaults to 140.0
nperm : float, optional
Value of nperm, defaults to 5.0
nu_ws : float, optional
Value of nu_ws, defaults to 7.0
perm50 : float, optional
Value of perm50, defaults to 0.35
phi : float, optional
Value of phi, defaults to 2.23
TOT_A : float, optional
Value of TOT_A, defaults to 25.0
Tref : float, optional
Value of Tref, defaults to 120.0
TRPN_n : float, optional
Value of TRPN_n, defaults to 2.0
wfrac : float, optional
Value of wfrac, defaults to 0.5
class carputils.model.ionic.GPB_LandIonicModel(*args, **kwargs)

Describes the GPB_Land ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
a : float, optional
Value of a, defaults to 0.35
A_1 : float, optional
Value of A_1, defaults to -29.0
A_2 : float, optional
Value of A_2, defaults to 116.0
alpha_1 : float, optional
Value of alpha_1, defaults to 0.1
alpha_2 : float, optional
Value of alpha_2, defaults to 0.5
beta_0 : float, optional
Value of beta_0, defaults to 1.65
beta_1 : float, optional
Value of beta_1, defaults to -1.5
Ca_50ref : float, optional
Value of Ca_50ref, defaults to 0.52
Ca_i_init : float, optional
Value of Ca_i_init, defaults to 0.08597401
Cao : float, optional
Value of Cao, defaults to 1.8
cell_type : float, optional
Value of cell_type
Cli : float, optional
Value of Cli, defaults to 15.0
Clo : float, optional
Value of Clo, defaults to 150.0
flags : float, optional
Value of flags
k_TRPN : float, optional
Value of k_TRPN, defaults to 0.14
k_xb : float, optional
Value of k_xb, defaults to 0.0049
Ki_init : float, optional
Value of Ki_init, defaults to 120.0
Ko : float, optional
Value of Ko, defaults to 5.4
lengthDep : float, optional
Value of lengthDep, defaults to 0.0
markov_iks : float, optional
Value of markov_iks, defaults to 0.0
Mgi : float, optional
Value of Mgi, defaults to 1.0
n_TRPN : float, optional
Value of n_TRPN, defaults to 1.54
n_xb : float, optional
Value of n_xb, defaults to 3.38
Nai_init : float, optional
Value of Nai_init, defaults to 9.06
Nao : float, optional
Value of Nao, defaults to 140.0
T_ref : float, optional
Value of T_ref, defaults to 117.1
TRPN_50 : float, optional
Value of TRPN_50, defaults to 0.37
class carputils.model.ionic.GPVatriaIonicModel(*args, **kwargs)

Describes the GPVatria ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
AF : float, optional
Value of AF, defaults to 0.0
factor_g_CaL : float, optional
Value of factor_g_CaL, defaults to 1.0
factor_g_K1 : float, optional
Value of factor_g_K1, defaults to 1.0
factor_J_SRCarel : float, optional
Value of factor_J_SRCarel, defaults to 1.0
factor_J_SRleak : float, optional
Value of factor_J_SRleak, defaults to 1.0
factor_Vmax_SRCaP : float, optional
Value of factor_Vmax_SRCaP, defaults to 1.0
ISO : float, optional
Value of ISO, defaults to 0.0
markov_iks : float, optional
Value of markov_iks, defaults to 0.0
RA : float, optional
Value of RA, defaults to 0.0
usefca : float, optional
Value of usefca, defaults to 0.0
class carputils.model.ionic.GTT2_fastIonicModel(*args, **kwargs)

Describes the GTT2_fast ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
ENDO : float, optional
Value of ENDO, defaults to 0.0
G_bCa : float, optional
Value of G_bCa, defaults to 0.000592
G_bNa : float, optional
Value of G_bNa, defaults to 0.00029
G_CaL : float, optional
Value of G_CaL, defaults to 3.98e-05
G_K1 : float, optional
Value of G_K1, defaults to 5.405
G_Kr : float, optional
Value of G_Kr, defaults to 0.153
G_Ks : float, optional
Value of G_Ks, defaults to 0.392
G_leak : float, optional
Value of G_leak, defaults to 0.00036
G_Na : float, optional
Value of G_Na, defaults to 14.838
G_NaCa : float, optional
Value of G_NaCa, defaults to 1000.0
G_NaK : float, optional
Value of G_NaK, defaults to 2.724
G_NaL : float, optional
Value of G_NaL, defaults to 0.0075
G_pCa : float, optional
Value of G_pCa, defaults to 0.1238
G_pK : float, optional
Value of G_pK, defaults to 0.0146
G_rel : float, optional
Value of G_rel, defaults to 0.102
G_tf : float, optional
Value of G_tf, defaults to 1.0
G_to : float, optional
Value of G_to, defaults to 0.294
G_up : float, optional
Value of G_up, defaults to 0.006375
G_vxfer : float, optional
Value of G_vxfer, defaults to 0.0038
class carputils.model.ionic.GTT2_fast_PURKIonicModel(*args, **kwargs)

Describes the GTT2_fast_PURK ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
D_CaL_off : float, optional
Value of D_CaL_off, defaults to 0.0
ENDO : float, optional
Value of ENDO, defaults to 0.0
G_bCa : float, optional
Value of G_bCa, defaults to 0.000592
G_bNa : float, optional
Value of G_bNa, defaults to 0.00029
G_CaL : float, optional
Value of G_CaL, defaults to 3.98e-05
G_K1 : float, optional
Value of G_K1, defaults to 5.405
G_Kr : float, optional
Value of G_Kr, defaults to 0.153
G_Ks : float, optional
Value of G_Ks, defaults to 0.392
G_leak : float, optional
Value of G_leak, defaults to 0.00036
G_Na : float, optional
Value of G_Na, defaults to 14.838
G_NaCa : float, optional
Value of G_NaCa, defaults to 1000.0
G_NaK : float, optional
Value of G_NaK, defaults to 2.724
G_NaL : float, optional
Value of G_NaL, defaults to 0.0075
G_pCa : float, optional
Value of G_pCa, defaults to 0.1238
G_pK : float, optional
Value of G_pK, defaults to 0.0146
G_rel : float, optional
Value of G_rel, defaults to 0.102
G_tf : float, optional
Value of G_tf, defaults to 1.0
G_to : float, optional
Value of G_to, defaults to 0.294
G_up : float, optional
Value of G_up, defaults to 0.006375
G_vxfer : float, optional
Value of G_vxfer, defaults to 0.0038
xr2_off : float, optional
Value of xr2_off, defaults to 0.0
class carputils.model.ionic.GW_CANIonicModel(*args, **kwargs)

Describes the GW_CAN ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
Cao : float, optional
Value of Cao, defaults to 2.0
CHF : float, optional
Value of CHF, defaults to 0.0
flags : float, optional
Value of flags
G_K1 : float, optional
Value of G_K1
G_Ks : float, optional
Value of G_Ks
G_Kv43 : float, optional
Value of G_Kv43
gNa : float, optional
Value of gNa, defaults to 12.8
kNaCa : float, optional
Value of kNaCa
Ko : float, optional
Value of Ko, defaults to 4.0
ksr : float, optional
Value of ksr
Nao : float, optional
Value of Nao, defaults to 138.0
PKv14 : float, optional
Value of PKv14, defaults to 1.708681e-07
type : float, optional
Value of type
class carputils.model.ionic.HHIonicModel(*args, **kwargs)

Describes the HH ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
g_K : float, optional
Value of g_K, defaults to 36.0
g_L : float, optional
Value of g_L, defaults to 0.3
g_Na : float, optional
Value of g_Na, defaults to 120.0
class carputils.model.ionic.IION_SRCIonicModel(*args, **kwargs)

Describes the IION_SRC ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
AP_ID : float, optional
Value of AP_ID, defaults to 0.0
class carputils.model.ionic.INADA_AVNIonicModel(*args, **kwargs)

Describes the INADA_AVN ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
cell_type : float, optional
Value of cell_type
Cm_cell : float, optional
Value of Cm_cell
E_b : float, optional
Value of E_b
E_CaL : float, optional
Value of E_CaL
flags : float, optional
Value of flags
g_b : float, optional
Value of g_b
g_CaL : float, optional
Value of g_CaL
g_f : float, optional
Value of g_f
g_K1 : float, optional
Value of g_K1
g_Kr : float, optional
Value of g_Kr
g_Na : float, optional
Value of g_Na
g_st : float, optional
Value of g_st
g_to : float, optional
Value of g_to
k_NaCa : float, optional
Value of k_NaCa
p_max : float, optional
Value of p_max
p_rel : float, optional
Value of p_rel
class carputils.model.ionic.IribeIonicModel(*args, **kwargs)

Describes the Iribe ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
K_i_init : float, optional
Value of K_i_init, defaults to 138.22
class carputils.model.ionic.JB_COURTEMANCHEIonicModel(*args, **kwargs)

Describes the JB_COURTEMANCHE ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
ACh : float, optional
Value of ACh, defaults to 1e-06
factor_dical : float, optional
Value of factor_dical, defaults to 0.0
factor_fical : float, optional
Value of factor_fical, defaults to 0.0
factor_ical_ft : float, optional
Value of factor_ical_ft, defaults to 1.0
factor_ina_c : float, optional
Value of factor_ina_c, defaults to 0.0
factor_ina_m : float, optional
Value of factor_ina_m, defaults to 0.0
factor_irel : float, optional
Value of factor_irel, defaults to 1.0
factor_itr : float, optional
Value of factor_itr, defaults to 1.0
factor_iup : float, optional
Value of factor_iup, defaults to 1.0
factor_kur : float, optional
Value of factor_kur, defaults to 1.0
factor_oa : float, optional
Value of factor_oa, defaults to 0.0
factor_tikr : float, optional
Value of factor_tikr, defaults to 1.0
g_bCa : float, optional
Value of g_bCa, defaults to 0.00113
g_bNa : float, optional
Value of g_bNa, defaults to 0.000674
g_CaL : float, optional
Value of g_CaL, defaults to 0.1238
g_K1 : float, optional
Value of g_K1, defaults to 0.09
g_Kr : float, optional
Value of g_Kr, defaults to 0.0294
g_Ks : float, optional
Value of g_Ks, defaults to 0.129
g_Na : float, optional
Value of g_Na, defaults to 7.8
g_to : float, optional
Value of g_to, defaults to 0.1652
K_o : float, optional
Value of K_o, defaults to 5.4
maxI_NaCa : float, optional
Value of maxI_NaCa, defaults to 1600.0
maxI_NaK : float, optional
Value of maxI_NaK, defaults to 0.6
maxI_pCa : float, optional
Value of maxI_pCa, defaults to 0.275
maxI_up : float, optional
Value of maxI_up, defaults to 0.005
P_ACh : float, optional
Value of P_ACh, defaults to 1.0
class carputils.model.ionic.KurataIonicModel(*args, **kwargs)

Describes the Kurata ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
ACh : float, optional
Value of ACh, defaults to 0.0
B_max : float, optional
Value of B_max, defaults to 0.56
Cm : float, optional
Value of Cm, defaults to 32.0
G_CaL : float, optional
Value of G_CaL, defaults to 0.58
G_h : float, optional
Value of G_h, defaults to 0.357
G_KACh_max : float, optional
Value of G_KACh_max
G_Kr : float, optional
Value of G_Kr
G_Ks : float, optional
Value of G_Ks, defaults to 0.025
G_Na : float, optional
Value of G_Na, defaults to 0.0
G_st : float, optional
Value of G_st, defaults to 0.015
G_sus : float, optional
Value of G_sus, defaults to 0.02
G_to : float, optional
Value of G_to, defaults to 0.18
class carputils.model.ionic.LMCGIonicModel(*args, **kwargs)

Describes the LMCG ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
Cao : float, optional
Value of Cao, defaults to 2.5
cell_type : float, optional
Value of cell_type
ECaL : float, optional
Value of ECaL, defaults to 50.0
flags : float, optional
Value of flags
gCaB : float, optional
Value of gCaB, defaults to 0.03
gCaL : float, optional
Value of gCaL, defaults to 4.0
gCaP : float, optional
Value of gCaP, defaults to 9.509
gCaT : float, optional
Value of gCaT, defaults to 6.0
gClB : float, optional
Value of gClB, defaults to 0.0
gK1 : float, optional
Value of gK1, defaults to 10.0
gKr : float, optional
Value of gKr, defaults to 7.0
gKs : float, optional
Value of gKs, defaults to 5.0
gNaB : float, optional
Value of gNaB, defaults to 0.03
gNaCa : float, optional
Value of gNaCa, defaults to 0.02
gsus : float, optional
Value of gsus, defaults to 2.4
gt : float, optional
Value of gt, defaults to 35.0
iNaKmax : float, optional
Value of iNaKmax, defaults to 64.41
Ki : float, optional
Value of Ki, defaults to 139.88
Ko : float, optional
Value of Ko, defaults to 5.0
Nai : float, optional
Value of Nai, defaults to 8.438
Nao : float, optional
Value of Nao, defaults to 140.0
pNa : float, optional
Value of pNa, defaults to 0.0014
class carputils.model.ionic.LR1IonicModel(*args, **kwargs)

Describes the LR1 ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
Ca_i_init : float, optional
Value of Ca_i_init, defaults to 0.0002
Gb : float, optional
Value of Gb, defaults to 0.03921
GK1bar : float, optional
Value of GK1bar, defaults to 0.604
GKbar : float, optional
Value of GKbar, defaults to 0.282
GKp : float, optional
Value of GKp, defaults to 0.0183
GNa : float, optional
Value of GNa, defaults to 23.0
Gsi : float, optional
Value of Gsi, defaults to 0.09
Ki : float, optional
Value of Ki, defaults to 145.0
Ko : float, optional
Value of Ko, defaults to 5.4
Nai : float, optional
Value of Nai, defaults to 18.0
Nao : float, optional
Value of Nao, defaults to 140.0
tau_d_factor : float, optional
Value of tau_d_factor, defaults to 1.0
tau_f_factor : float, optional
Value of tau_f_factor, defaults to 1.0
class carputils.model.ionic.LRDIIIonicModel(*args, **kwargs)

Describes the LRDII ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
*capulse_AP : float, optional
Value of *capulse_AP
*capulse_CaO : float, optional
Value of *capulse_CaO
*flags : float, optional
Value of *flags
caincyc : float, optional
Value of caincyc
cell_type : float, optional
Value of cell_type, defaults to 1.0
dvdt_thresh : float, optional
Value of dvdt_thresh, defaults to 20.0
extern_Cab : float, optional
Value of extern_Cab, defaults to 0.0
gCaL : float, optional
Value of gCaL, defaults to 1.0
gKr : float, optional
Value of gKr, defaults to 0.02614
gKs : float, optional
Value of gKs, defaults to 1.0
grel_AP : float, optional
Value of grel_AP, defaults to 38.0
grel_CaO : float, optional
Value of grel_CaO, defaults to 3.0
pulsecyc : float, optional
Value of pulsecyc
ratio[0] : float, optional
Value of ratio[0], defaults to 1.0
ratio[1] : float, optional
Value of ratio[1], defaults to 1.0
ratio[2] : float, optional
Value of ratio[2], defaults to 1.0
ratio[3] : float, optional
Value of ratio[3]
tauSR_AP : float, optional
Value of tauSR_AP, defaults to 3.5
tauSR_CaO : float, optional
Value of tauSR_CaO, defaults to 6.0
class carputils.model.ionic.LRDII_FIonicModel(*args, **kwargs)

Describes the LRDII_F ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
*capulse_cicr : float, optional
Value of *capulse_cicr
*capulse_jsrol : float, optional
Value of *capulse_jsrol
cicr_pulsecyc : float, optional
Value of cicr_pulsecyc
ext_conc_dt : float, optional
Value of ext_conc_dt, defaults to 0.0
extern_Cab : float, optional
Value of extern_Cab
g_NaB : float, optional
Value of g_NaB, defaults to 0.004
g_NaK : float, optional
Value of g_NaK, defaults to 1.0
gamma : float, optional
Value of gamma, defaults to 0.8
jsrol_pulsecyc : float, optional
Value of jsrol_pulsecyc
scl_tau_f : float, optional
Value of scl_tau_f, defaults to 1.0
class carputils.model.ionic.MBRDRIonicModel(*args, **kwargs)

Describes the MBRDR ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
APDshorten : float, optional
Value of APDshorten, defaults to 1.0
GNa : float, optional
Value of GNa, defaults to 15.0
Gsi : float, optional
Value of Gsi, defaults to 0.09
class carputils.model.ionic.MacCannell_FbIonicModel(*args, **kwargs)

Describes the MacCannell_Fb ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
g_b_Na : float, optional
Value of g_b_Na, defaults to 0.0095
g_K1 : float, optional
Value of g_K1, defaults to 0.4822
g_Kv : float, optional
Value of g_Kv, defaults to 0.25
i_bar_NaK : float, optional
Value of i_bar_NaK, defaults to 1.4
K_i_init : float, optional
Value of K_i_init, defaults to 140.045865
K_o : float, optional
Value of K_o, defaults to 5.4
Na_i_init : float, optional
Value of Na_i_init, defaults to 9.954213
Na_o : float, optional
Value of Na_o, defaults to 130.0
class carputils.model.ionic.MitchellSchaefferIonicModel(*args, **kwargs)

Describes the MitchellSchaeffer ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
tau_close : float, optional
Value of tau_close, defaults to 150.0
tau_in : float, optional
Value of tau_in, defaults to 0.3
tau_open : float, optional
Value of tau_open, defaults to 120.0
tau_out : float, optional
Value of tau_out, defaults to 5.0
V_gate : float, optional
Value of V_gate, defaults to 0.13
V_max : float, optional
Value of V_max, defaults to 1.0
V_min : float, optional
Value of V_min, defaults to 0.0
class carputils.model.ionic.MurineMouseIonicModel(*args, **kwargs)

Describes the MurineMouse ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
a : float, optional
Value of a, defaults to 0.0625
Acap : float, optional
Value of Acap, defaults to 0.00013866
aKss_init : float, optional
Value of aKss_init, defaults to 0.287585636847048
ato_f_init : float, optional
Value of ato_f_init, defaults to 0.0142335908879204
ato_s_init : float, optional
Value of ato_s_init, defaults to 0.0443263407760382
aur_init : float, optional
Value of aur_init, defaults to 0.00346258606821817
b : float, optional
Value of b, defaults to 0.4
Beta_Na4 : float, optional
Value of Beta_Na4
Beta_Na5 : float, optional
Value of Beta_Na5
Bmax : float, optional
Value of Bmax, defaults to 109.0
C_K1_init : float, optional
Value of C_K1_init, defaults to 0.0011733433957123
C_K2_init : float, optional
Value of C_K2_init, defaults to 0.00105586824723736
C_Na1_init : float, optional
Value of C_Na1_init, defaults to 0.000420472760277688
C_Na2_init : float, optional
Value of C_Na2_init, defaults to 0.0240114508843199
Ca_i_init : float, optional
Value of Ca_i_init, defaults to 0.0949915068139801
CaJSR_init : float, optional
Value of CaJSR_init, defaults to 171.167969039613
CaMKt_init : float, optional
Value of CaMKt_init, defaults to 0.729027738385079
CaNSR_init : float, optional
Value of CaNSR_init, defaults to 404.825013216286
Cao : float, optional
Value of Cao, defaults to 1400.0
Cass_init : float, optional
Value of Cass_init, defaults to 0.0954184301907784
Cm : float, optional
Value of Cm, defaults to 1.0
const5 : float, optional
Value of const5, defaults to 8.2
CSQN_tot : float, optional
Value of CSQN_tot, defaults to 50000.0
delta_V_L : float, optional
Value of delta_V_L, defaults to 6.4489
E_Cl : float, optional
Value of E_Cl, defaults to -40.0
eta : float, optional
Value of eta, defaults to 0.35
F : float, optional
Value of F, defaults to 96.5
g_Cab : float, optional
Value of g_Cab, defaults to 0.0007
g_ClCa : float, optional
Value of g_ClCa, defaults to 10.0
g_K1 : float, optional
Value of g_K1, defaults to 0.35
g_Kr : float, optional
Value of g_Kr, defaults to 0.0165
g_Ks : float, optional
Value of g_Ks, defaults to 0.00575
g_Kss : float, optional
Value of g_Kss, defaults to 0.0595
g_Kto_f : float, optional
Value of g_Kto_f, defaults to 0.5347
g_Kto_s : float, optional
Value of g_Kto_s, defaults to 0.0
g_Kur : float, optional
Value of g_Kur, defaults to 0.25
g_Na : float, optional
Value of g_Na, defaults to 16.0
g_Nab : float, optional
Value of g_Nab, defaults to 0.0026
I1_Na_init : float, optional
Value of I1_Na_init, defaults to 0.000517471697712382
I2_Na_init : float, optional
Value of I2_Na_init, defaults to 2.45406116958509e-05
i_CaL_max : float, optional
Value of i_CaL_max, defaults to 7.0
I_init : float, optional
Value of I_init, defaults to 0.427651445872853
I_K_init : float, optional
Value of I_K_init, defaults to 0.00140618453684944
i_NaK_max : float, optional
Value of i_NaK_max, defaults to 2.486
i_pCa_max : float, optional
Value of i_pCa_max, defaults to 0.0955
IC_Na2_init : float, optional
Value of IC_Na2_init, defaults to 0.0174528857380179
IC_Na3_init : float, optional
Value of IC_Na3_init, defaults to 0.402980726914811
IF_Na_init : float, optional
Value of IF_Na_init, defaults to 0.000306123648969581
ito_f_init : float, optional
Value of ito_f_init, defaults to 0.996989882138174
ito_s_init : float, optional
Value of ito_s_init, defaults to 0.887568880831388
iur_init : float, optional
Value of iur_init, defaults to 0.955684946168062
K_L : float, optional
Value of K_L, defaults to 0.3
K_mAllo : float, optional
Value of K_mAllo, defaults to 0.0
K_mCai : float, optional
Value of K_mCai, defaults to 3.6
K_mCao : float, optional
Value of K_mCao, defaults to 1400.0
k_minus_a : float, optional
Value of k_minus_a, defaults to 0.07125
k_minus_b : float, optional
Value of k_minus_b, defaults to 0.965
k_minus_c : float, optional
Value of k_minus_c, defaults to 0.0008
K_mNai : float, optional
Value of K_mNai, defaults to 12000.0
K_mNao : float, optional
Value of K_mNao, defaults to 88000.0
k_plus_a : float, optional
Value of k_plus_a, defaults to 0.006075
k_plus_b : float, optional
Value of k_plus_b, defaults to 0.00405
k_plus_c : float, optional
Value of k_plus_c, defaults to 0.009
k_sat : float, optional
Value of k_sat, defaults to 0.27
kb : float, optional
Value of kb, defaults to 0.036778
Kd : float, optional
Value of Kd, defaults to 0.6
kf : float, optional
Value of kf, defaults to 0.023761
Ki_init : float, optional
Value of Ki_init, defaults to 115599.50642567
Km_Cl : float, optional
Value of Km_Cl, defaults to 10.0
Km_CSQN : float, optional
Value of Km_CSQN, defaults to 630.0
Km_Ko : float, optional
Value of Km_Ko, defaults to 1500.0
Km_Nai : float, optional
Value of Km_Nai, defaults to 16600.0
Km_pCa : float, optional
Value of Km_pCa, defaults to 0.2885
Km_up : float, optional
Value of Km_up, defaults to 0.412
Ko : float, optional
Value of Ko, defaults to 5400.0
m : float, optional
Value of m, defaults to 3.0
n : float, optional
Value of n, defaults to 4.0
Nai_init : float, optional
Value of Nai_init, defaults to 12364.7482121793
Nao : float, optional
Value of Nao, defaults to 134000.0
nKs_init : float, optional
Value of nKs_init, defaults to 0.00336735013094628
O_init : float, optional
Value of O_init, defaults to 1.23713515513533e-06
O_K_init : float, optional
Value of O_K_init, defaults to 0.0131742086125972
O_Na_init : float, optional
Value of O_Na_init, defaults to 1.46826771436314e-06
off_rate : float, optional
Value of off_rate, defaults to 0.0002
on_rate : float, optional
Value of on_rate, defaults to 0.05
P_C2_init : float, optional
Value of P_C2_init, defaults to 0.565182571165673
P_CaL : float, optional
Value of P_CaL, defaults to 2.5
P_O1_init : float, optional
Value of P_O1_init, defaults to 0.00571393383393735
P_O2_init : float, optional
Value of P_O2_init, defaults to 2.09864618235341e-08
P_ryr_const1 : float, optional
Value of P_ryr_const1, defaults to -0.01
P_ryr_const2 : float, optional
Value of P_ryr_const2, defaults to -2.0
P_RyR_init : float, optional
Value of P_RyR_init, defaults to 0.000280539508743811
phi_L : float, optional
Value of phi_L, defaults to 1.798
R : float, optional
Value of R, defaults to 8.314
T : float, optional
Value of T, defaults to 308.0
t_L : float, optional
Value of t_L, defaults to 1.5
tau_i_const : float, optional
Value of tau_i_const, defaults to 643.0
tau_L : float, optional
Value of tau_L, defaults to 1150.0
tau_tr : float, optional
Value of tau_tr, defaults to 20.0
tau_xfer : float, optional
Value of tau_xfer, defaults to 8.0
v1 : float, optional
Value of v1, defaults to 4.5
v1_caff : float, optional
Value of v1_caff, defaults to 10.0
v2 : float, optional
Value of v2, defaults to 3e-05
v2_caff : float, optional
Value of v2_caff, defaults to 0.1
V_init : float, optional
Value of V_init, defaults to -78.9452115785979
V_L : float, optional
Value of V_L, defaults to 0.0
V_max_NCX : float, optional
Value of V_max_NCX, defaults to 3.939
VJSR : float, optional
Value of VJSR, defaults to 7.7e-08
vmup_init : float, optional
Value of vmup_init, defaults to 0.5059
Vmyo : float, optional
Value of Vmyo, defaults to 2.2e-05
VNSR : float, optional
Value of VNSR, defaults to 2.31e-07
Vss : float, optional
Value of Vss, defaults to 2.2e-08
y_gate_init : float, optional
Value of y_gate_init, defaults to 0.845044436980163
y_gate_tau_const1 : float, optional
Value of y_gate_tau_const1, defaults to 8.0
y_gate_tau_const2 : float, optional
Value of y_gate_tau_const2, defaults to 315.0
class carputils.model.ionic.NYGRENIonicModel(*args, **kwargs)

Describes the NYGREN ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
extern_Cab : float, optional
Value of extern_Cab
G_Ca : float, optional
Value of G_Ca, defaults to 1.0
G_Kr : float, optional
Value of G_Kr, defaults to 1.0
G_to : float, optional
Value of G_to, defaults to 1.0
class carputils.model.ionic.ORdIonicModel(*args, **kwargs)

Describes the ORd ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
blf_ICab : float, optional
Value of blf_ICab, defaults to 1.0
blf_ICaK : float, optional
Value of blf_ICaK, defaults to 1.0
blf_ICaL : float, optional
Value of blf_ICaL, defaults to 1.0
blf_ICaNa : float, optional
Value of blf_ICaNa, defaults to 1.0
blf_INab : float, optional
Value of blf_INab, defaults to 1.0
blf_INaCa_i : float, optional
Value of blf_INaCa_i, defaults to 1.0
blf_INaCa_ss : float, optional
Value of blf_INaCa_ss, defaults to 1.0
blf_INaK : float, optional
Value of blf_INaK, defaults to 1.0
cao : float, optional
Value of cao, defaults to 1.8
celltype : float, optional
Value of celltype
flags : float, optional
Value of flags
GK1 : float, optional
Value of GK1
GKb : float, optional
Value of GKb
GKr : float, optional
Value of GKr
GKs : float, optional
Value of GKs
GNa : float, optional
Value of GNa
GNaL : float, optional
Value of GNaL
Gncx : float, optional
Value of Gncx
GpCa : float, optional
Value of GpCa, defaults to 0.0005
Gto : float, optional
Value of Gto
INa_Type : float, optional
Value of INa_Type
jrel_stiff_const : float, optional
Value of jrel_stiff_const, defaults to 0.005
ko : float, optional
Value of ko, defaults to 5.4
nao : float, optional
Value of nao, defaults to 140.0
scale_tau_m : float, optional
Value of scale_tau_m, defaults to 0.3
shift_m_inf : float, optional
Value of shift_m_inf, defaults to -8.0
class carputils.model.ionic.PASSIVEIonicModel(*args, **kwargs)

Describes the PASSIVE ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
Gm : float, optional
Value of Gm
Rm : float, optional
Value of Rm, defaults to 10.0
Vrest : float, optional
Value of Vrest, defaults to 0.0
class carputils.model.ionic.PRd2IonicModel(*args, **kwargs)

Describes the PRd2 ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
gRyR3 : float, optional
Value of gRyR3, defaults to 15.0
RyR2_sens : float, optional
Value of RyR2_sens, defaults to 1.0
RyR2_tau : float, optional
Value of RyR2_tau, defaults to 6.0
class carputils.model.ionic.PUGIonicModel(*args, **kwargs)

Describes the PUG ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
*capulse_cicr : float, optional
Value of *capulse_cicr
*capulse_jsrol : float, optional
Value of *capulse_jsrol
*flags : float, optional
Value of *flags
Cai_init : float, optional
Value of Cai_init
CaNSRbar : float, optional
Value of CaNSRbar
Cao : float, optional
Value of Cao
cell_type : float, optional
Value of cell_type, defaults to 0.0
cicr_pulsecyc : float, optional
Value of cicr_pulsecyc
Cm : float, optional
Value of Cm
dvdt_thresh : float, optional
Value of dvdt_thresh, defaults to 20.0
ECaT : float, optional
Value of ECaT
extern_Cab : float, optional
Value of extern_Cab
ff_GCaL : float, optional
Value of ff_GCaL
ff_GKs : float, optional
Value of ff_GKs
ff_INaCa : float, optional
Value of ff_INaCa
ff_tauXs : float, optional
Value of ff_tauXs
GCab : float, optional
Value of GCab
GCaT : float, optional
Value of GCaT, defaults to 0.05
GClCa : float, optional
Value of GClCa
GK1 : float, optional
Value of GK1, defaults to 0.54
GKp : float, optional
Value of GKp, defaults to 0.008
GKr : float, optional
Value of GKr, defaults to 0.035
GNa : float, optional
Value of GNa, defaults to 8.0
GNab : float, optional
Value of GNab
Gto : float, optional
Value of Gto, defaults to 0.06
Iupbar : float, optional
Value of Iupbar
jsrol_pulsecyc : float, optional
Value of jsrol_pulsecyc
Ki_const : float, optional
Value of Ki_const
Ki_init : float, optional
Value of Ki_init
Kmup : float, optional
Value of Kmup
Ko : float, optional
Value of Ko
Nai_const : float, optional
Value of Nai_const
Nai_init : float, optional
Value of Nai_init
ratio[0] : float, optional
Value of ratio[0], defaults to 1.0
ratio[1] : float, optional
Value of ratio[1], defaults to 1.0
ratio[2] : float, optional
Value of ratio[2], defaults to 1.0
ratio[3] : float, optional
Value of ratio[3]
T : float, optional
Value of T
tau_tr : float, optional
Value of tau_tr
validate : float, optional
Value of validate
Vc : float, optional
Value of Vc
Vm_init : float, optional
Value of Vm_init
class carputils.model.ionic.PanditIonicModel(*args, **kwargs)

Describes the Pandit ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
*flags : float, optional
Value of *flags
a : float, optional
Value of a, defaults to 0.886
b : float, optional
Value of b
Beta : float, optional
Value of Beta
C_m : float, optional
Value of C_m
cell_type : float, optional
Value of cell_type, defaults to 0.0
concFact : float, optional
Value of concFact, defaults to 1.0
EGTA : float, optional
Value of EGTA, defaults to 0.0
G_CaB : float, optional
Value of G_CaB, defaults to 3.24e-05
G_CaL : float, optional
Value of G_CaL, defaults to 0.031
G_Na : float, optional
Value of G_Na, defaults to 0.8
G_NaB : float, optional
Value of G_NaB, defaults to 8.015e-05
G_SS : float, optional
Value of G_SS, defaults to 0.007
G_to : float, optional
Value of G_to, defaults to 0.035
I_NaK_ss : float, optional
Value of I_NaK_ss, defaults to 0.08
K1fact : float, optional
Value of K1fact, defaults to 1.0
K_O : float, optional
Value of K_O, defaults to 5.4
K_sr : float, optional
Value of K_sr
Na_O : float, optional
Value of Na_O, defaults to 140.0
Nu_maxf : float, optional
Value of Nu_maxf, defaults to 0.04
srMethod : float, optional
Value of srMethod
VclampF : float, optional
Value of VclampF, defaults to 0.0
VclampV : float, optional
Value of VclampV, defaults to 0.0
class carputils.model.ionic.PassiveIonicRegion(*args, **kwargs)

Describes the passive ionic model configuration

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
class carputils.model.ionic.RNCIonicModel(*args, **kwargs)

Describes the RNC ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
extern_Cab : float, optional
Value of extern_Cab
g_CaL : float, optional
Value of g_CaL, defaults to 0.24
g_Kr : float, optional
Value of g_Kr, defaults to 0.06984
g_Na : float, optional
Value of g_Na, defaults to 7.8
g_to : float, optional
Value of g_to, defaults to 0.19824
maxCa_up : float, optional
Value of maxCa_up, defaults to 15.0
tau_tr : float, optional
Value of tau_tr, defaults to 180.0
tau_u : float, optional
Value of tau_u, defaults to 8.0
class carputils.model.ionic.Rat_neonIonicModel(*args, **kwargs)

Describes the Rat_neon ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
AcapCm2F : float, optional
Value of AcapCm2F
AcapCmFVmyo : float, optional
Value of AcapCmFVmyo
CMDNtot : float, optional
Value of CMDNtot, defaults to 50.0
CSQNtot : float, optional
Value of CSQNtot, defaults to 24750.0
DCa : float, optional
Value of DCa, defaults to 7.0
dx : float, optional
Value of dx, defaults to 0.1
GCaL : float, optional
Value of GCaL
GCaT : float, optional
Value of GCaT, defaults to 0.2
Gf : float, optional
Value of Gf, defaults to 0.021
GK1 : float, optional
Value of GK1, defaults to 0.0515
GKr : float, optional
Value of GKr, defaults to 0.06
GKs : float, optional
Value of GKs, defaults to 0.05
GNa : float, optional
Value of GNa, defaults to 35.0
Gto : float, optional
Value of Gto, defaults to 0.1
k_leak : float, optional
Value of k_leak, defaults to 5e-06
KmCMDN : float, optional
Value of KmCMDN, defaults to 2.38
KmCSQN : float, optional
Value of KmCSQN, defaults to 800.0
Kmf : float, optional
Value of Kmf, defaults to 0.5
Kmr : float, optional
Value of Kmr
KmTRPN : float, optional
Value of KmTRPN, defaults to 0.5
kNCX : float, optional
Value of kNCX, defaults to 2.268e-16
kRyR : float, optional
Value of kRyR, defaults to 0.01
rSL : float, optional
Value of rSL, defaults to 10.5
rSR : float, optional
Value of rSR, defaults to 6.0
TRPNtot : float, optional
Value of TRPNtot, defaults to 35.0
V_sub_SL : float, optional
Value of V_sub_SL
V_sub_SR : float, optional
Value of V_sub_SR
Vmax : float, optional
Value of Vmax, defaults to 0.9996
class carputils.model.ionic.SCIonicModel(*args, **kwargs)

Describes the SC ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
k : float, optional
Value of k, defaults to 0.0
wKr : float, optional
Value of wKr, defaults to 0.0
wKs : float, optional
Value of wKs, defaults to 0.0
class carputils.model.ionic.SHANNONIonicModel(*args, **kwargs)

Describes the SHANNON ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
class carputils.model.ionic.StewardIonicModel(*args, **kwargs)

Describes the Steward ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
g_bca : float, optional
Value of g_bca, defaults to 0.000592
g_bna : float, optional
Value of g_bna, defaults to 0.00029
g_CaL : float, optional
Value of g_CaL, defaults to 3.98e-05
g_f_K : float, optional
Value of g_f_K, defaults to 0.0234346
g_f_Na : float, optional
Value of g_f_Na, defaults to 0.0145654
g_K1 : float, optional
Value of g_K1, defaults to 0.065
g_Kr : float, optional
Value of g_Kr, defaults to 0.0918
g_Ks : float, optional
Value of g_Ks, defaults to 0.2352
g_Na : float, optional
Value of g_Na, defaults to 130.5744
g_pCa : float, optional
Value of g_pCa, defaults to 0.1238
g_pK : float, optional
Value of g_pK, defaults to 0.0146
g_sus : float, optional
Value of g_sus, defaults to 0.0227
g_to : float, optional
Value of g_to, defaults to 0.08184
K_NaCa : float, optional
Value of K_NaCa, defaults to 1000.0
P_NaK : float, optional
Value of P_NaK, defaults to 2.724
class carputils.model.ionic.TT2IonicModel(*args, **kwargs)

Describes the TT2 ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
big_cnt : float, optional
Value of big_cnt, defaults to 0.0
Bufc : float, optional
Value of Bufc, defaults to 0.2
Bufsr : float, optional
Value of Bufsr, defaults to 10.0
Cao : float, optional
Value of Cao, defaults to 2.0
CAPACITANCE : float, optional
Value of CAPACITANCE, defaults to 0.185
cell_type : float, optional
Value of cell_type, defaults to 0.0
F : float, optional
Value of F, defaults to 96485.3415
flags : float, optional
Value of flags
fmode : float, optional
Value of fmode, defaults to 0.0
GbCa : float, optional
Value of GbCa, defaults to 0.000592
GbNa : float, optional
Value of GbNa, defaults to 0.00029
GCaL : float, optional
Value of GCaL, defaults to 3.98e-05
GK1 : float, optional
Value of GK1, defaults to 5.405
Gkr : float, optional
Value of Gkr, defaults to 0.153
Gks : float, optional
Value of Gks, defaults to 0.392
GNa : float, optional
Value of GNa, defaults to 14.838
GpCa : float, optional
Value of GpCa, defaults to 0.1238
GpK : float, optional
Value of GpK, defaults to 0.0146
Gto : float, optional
Value of Gto, defaults to 0.073
IpK : float, optional
Value of IpK
Kbufc : float, optional
Value of Kbufc, defaults to 0.001
Kbufsr : float, optional
Value of Kbufsr, defaults to 0.3
KmCa : float, optional
Value of KmCa, defaults to 1.38
KmK : float, optional
Value of KmK, defaults to 1.0
KmNa : float, optional
Value of KmNa, defaults to 40.0
KmNai : float, optional
Value of KmNai, defaults to 87.5
knaca : float, optional
Value of knaca, defaults to 1000.0
knak : float, optional
Value of knak, defaults to 2.724
Ko : float, optional
Value of Ko, defaults to 5.4
KpCa : float, optional
Value of KpCa, defaults to 0.0005
ksat : float, optional
Value of ksat, defaults to 0.1
Kup : float, optional
Value of Kup, defaults to 0.00025
n : float, optional
Value of n, defaults to 0.35
Nao : float, optional
Value of Nao, defaults to 140.0
pKNa : float, optional
Value of pKNa, defaults to 0.03
R : float, optional
Value of R, defaults to 8314.472
RTONF : float, optional
Value of RTONF
scl_tau_f : float, optional
Value of scl_tau_f, defaults to 1.0
T : float, optional
Value of T, defaults to 310.0
Vc : float, optional
Value of Vc, defaults to 0.016404
Vmaxup : float, optional
Value of Vmaxup, defaults to 0.006375
Vsr : float, optional
Value of Vsr, defaults to 0.001094
class carputils.model.ionic.TTIonicModel(*args, **kwargs)

Describes the TT ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
Bufc : float, optional
Value of Bufc, defaults to 0.15
Bufsr : float, optional
Value of Bufsr, defaults to 10.0
Cao : float, optional
Value of Cao, defaults to 2.0
CAPACITANCE : float, optional
Value of CAPACITANCE, defaults to 0.185
cell_type : float, optional
Value of cell_type, defaults to 0.0
F : float, optional
Value of F, defaults to 96485.3415
flags : float, optional
Value of flags
fmode : float, optional
Value of fmode
GbCa : float, optional
Value of GbCa, defaults to 0.000592
GbNa : float, optional
Value of GbNa, defaults to 0.00029
GCaL : float, optional
Value of GCaL, defaults to 0.000175
GK1 : float, optional
Value of GK1, defaults to 5.405
Gkr : float, optional
Value of Gkr, defaults to 0.096
Gks : float, optional
Value of Gks, defaults to 0.245
GNa : float, optional
Value of GNa, defaults to 14.838
GpCa : float, optional
Value of GpCa, defaults to 0.825
GpK : float, optional
Value of GpK, defaults to 0.0146
Gto : float, optional
Value of Gto, defaults to 0.073
IpK : float, optional
Value of IpK
Kbufc : float, optional
Value of Kbufc, defaults to 0.001
Kbufsr : float, optional
Value of Kbufsr, defaults to 0.3
KmCa : float, optional
Value of KmCa, defaults to 1.38
KmK : float, optional
Value of KmK, defaults to 1.0
KmNa : float, optional
Value of KmNa, defaults to 40.0
KmNai : float, optional
Value of KmNai, defaults to 87.5
knaca : float, optional
Value of knaca, defaults to 1000.0
knak : float, optional
Value of knak, defaults to 1.362
Ko : float, optional
Value of Ko, defaults to 5.4
KpCa : float, optional
Value of KpCa, defaults to 0.0005
ksat : float, optional
Value of ksat, defaults to 0.1
Kup : float, optional
Value of Kup, defaults to 0.00025
n : float, optional
Value of n, defaults to 0.35
Nao : float, optional
Value of Nao, defaults to 140.0
pKNa : float, optional
Value of pKNa, defaults to 0.03
R : float, optional
Value of R, defaults to 8314.472
RTONF : float, optional
Value of RTONF
T : float, optional
Value of T, defaults to 310.0
taufca : float, optional
Value of taufca, defaults to 2.0
taug : float, optional
Value of taug, defaults to 2.0
Vc : float, optional
Value of Vc, defaults to 0.016404
Vmaxup : float, optional
Value of Vmaxup, defaults to 0.000425
Vsr : float, optional
Value of Vsr, defaults to 0.001094
class carputils.model.ionic.TTREDIonicModel(*args, **kwargs)

Describes the TTRED ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
Bufc : float, optional
Value of Bufc
Bufsr : float, optional
Value of Bufsr
Cao : float, optional
Value of Cao, defaults to 2.0
CAPACITANCE : float, optional
Value of CAPACITANCE, defaults to 0.185
cell_type : float, optional
Value of cell_type
fmode : float, optional
Value of fmode
GbCa : float, optional
Value of GbCa, defaults to 0.000592
GbNa : float, optional
Value of GbNa, defaults to 0.00029
GCaL : float, optional
Value of GCaL, defaults to 0.2786
GK1 : float, optional
Value of GK1, defaults to 5.405
Gkr : float, optional
Value of Gkr, defaults to 0.101
Gks : float, optional
Value of Gks, defaults to 0.392
GNa : float, optional
Value of GNa, defaults to 14.838
GpCa : float, optional
Value of GpCa, defaults to 0.1238
GpK : float, optional
Value of GpK, defaults to 0.0293
Gto : float, optional
Value of Gto, defaults to 0.073
IpK : float, optional
Value of IpK
Kbufc : float, optional
Value of Kbufc
Kbufsr : float, optional
Value of Kbufsr
KmCa : float, optional
Value of KmCa, defaults to 1.38
KmK : float, optional
Value of KmK, defaults to 1.0
KmNa : float, optional
Value of KmNa, defaults to 40.0
KmNai : float, optional
Value of KmNai, defaults to 87.5
knaca : float, optional
Value of knaca, defaults to 1000.0
knak : float, optional
Value of knak, defaults to 2.724
Ko : float, optional
Value of Ko, defaults to 5.4
KpCa : float, optional
Value of KpCa, defaults to 0.0005
ksat : float, optional
Value of ksat, defaults to 0.1
Kup : float, optional
Value of Kup
n : float, optional
Value of n, defaults to 0.35
Nao : float, optional
Value of Nao, defaults to 140.0
pKNa : float, optional
Value of pKNa, defaults to 0.03
RTONF : float, optional
Value of RTONF
T : float, optional
Value of T, defaults to 310.0
Vc : float, optional
Value of Vc, defaults to 0.016404
Vmaxup : float, optional
Value of Vmaxup
Vsr : float, optional
Value of Vsr, defaults to 0.001094
class carputils.model.ionic.ToRORd_dynClIonicModel(*args, **kwargs)

Describes the ToRORd_dynCl ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
A_atp : float, optional
Value of A_atp, defaults to 2.0
aCaMK : float, optional
Value of aCaMK, defaults to 0.05
Aff : float, optional
Value of Aff, defaults to 0.6
alpha_1 : float, optional
Value of alpha_1, defaults to 0.154375
bCaMK : float, optional
Value of bCaMK, defaults to 0.00068
beta_1 : float, optional
Value of beta_1, defaults to 0.1911
BSLmax : float, optional
Value of BSLmax, defaults to 1.124
BSRmax : float, optional
Value of BSRmax, defaults to 0.047
bt : float, optional
Value of bt, defaults to 4.75
cajsr_half : float, optional
Value of cajsr_half, defaults to 1.7
CaMKo : float, optional
Value of CaMKo, defaults to 0.05
cao : float, optional
Value of cao, defaults to 1.8
celltype : float, optional
Value of celltype, defaults to 0.0
clo : float, optional
Value of clo, defaults to 150.0
cmdnmax_b : float, optional
Value of cmdnmax_b, defaults to 0.05
csqnmax : float, optional
Value of csqnmax, defaults to 10.0
delta : float, optional
Value of delta, defaults to -0.155
dielConstant : float, optional
Value of dielConstant, defaults to 74.0
EKshift : float, optional
Value of EKshift, defaults to 0.0
eP : float, optional
Value of eP, defaults to 4.2
F : float, optional
Value of F, defaults to 96485.0
Fjunc : float, optional
Value of Fjunc, defaults to 1.0
fkatp : float, optional
Value of fkatp, defaults to 0.0
flags : float, optional
Value of flags
GClb : float, optional
Value of GClb, defaults to 0.00198
GClCa : float, optional
Value of GClCa, defaults to 0.2843
GK1_b : float, optional
Value of GK1_b, defaults to 0.6992
gkatp : float, optional
Value of gkatp, defaults to 4.3195
GKb_b : float, optional
Value of GKb_b, defaults to 0.0189
GKr_b : float, optional
Value of GKr_b, defaults to 0.0321
GKs_b : float, optional
Value of GKs_b, defaults to 0.0011
GNa : float, optional
Value of GNa, defaults to 11.7802
GNaL_b : float, optional
Value of GNaL_b, defaults to 0.0279
Gncx_b : float, optional
Value of Gncx_b, defaults to 0.0034
GpCa : float, optional
Value of GpCa, defaults to 0.0005
Gto_b : float, optional
Value of Gto_b, defaults to 0.16
H : float, optional
Value of H, defaults to 1e-07
ICaL_fractionSS : float, optional
Value of ICaL_fractionSS, defaults to 0.8
INaCa_fractionSS : float, optional
Value of INaCa_fractionSS, defaults to 0.35
Jrel_b : float, optional
Value of Jrel_b, defaults to 1.5378
Jup_b : float, optional
Value of Jup_b, defaults to 1.0
k1m : float, optional
Value of k1m, defaults to 182.4
k1p : float, optional
Value of k1p, defaults to 949.5
k2m : float, optional
Value of k2m, defaults to 39.4
k2n : float, optional
Value of k2n, defaults to 500.0
k2p : float, optional
Value of k2p, defaults to 687.2
k3m : float, optional
Value of k3m, defaults to 79300.0
k3p : float, optional
Value of k3p, defaults to 1899.0
k4m : float, optional
Value of k4m, defaults to 40.0
k4p : float, optional
Value of k4p, defaults to 639.0
K_atp : float, optional
Value of K_atp, defaults to 0.25
K_o_n : float, optional
Value of K_o_n, defaults to 5.0
kasymm : float, optional
Value of kasymm, defaults to 12.5
kcaoff : float, optional
Value of kcaoff, defaults to 5000.0
kcaon : float, optional
Value of kcaon, defaults to 1500000.0
KdClCa : float, optional
Value of KdClCa, defaults to 0.1
Khp : float, optional
Value of Khp, defaults to 1.698e-07
Kki : float, optional
Value of Kki, defaults to 0.5
Kko : float, optional
Value of Kko, defaults to 0.3582
KmBSL : float, optional
Value of KmBSL, defaults to 0.0087
KmBSR : float, optional
Value of KmBSR, defaults to 0.00087
KmCaAct : float, optional
Value of KmCaAct, defaults to 0.00015
KmCaM : float, optional
Value of KmCaM, defaults to 0.0015
KmCaMK : float, optional
Value of KmCaMK, defaults to 0.15
KmCap : float, optional
Value of KmCap, defaults to 0.0005
kmcmdn : float, optional
Value of kmcmdn, defaults to 0.00238
kmcsqn : float, optional
Value of kmcsqn, defaults to 0.8
Kmgatp : float, optional
Value of Kmgatp, defaults to 1.698e-07
Kmn : float, optional
Value of Kmn, defaults to 0.002
kmtrpn : float, optional
Value of kmtrpn, defaults to 0.0005
kna1 : float, optional
Value of kna1, defaults to 15.0
kna2 : float, optional
Value of kna2, defaults to 5.0
kna3 : float, optional
Value of kna3, defaults to 88.12
Knai0 : float, optional
Value of Knai0, defaults to 9.073
Knao0 : float, optional
Value of Knao0, defaults to 27.78
Knap : float, optional
Value of Knap, defaults to 224.0
ko : float, optional
Value of ko, defaults to 5.0
Kxkur : float, optional
Value of Kxkur, defaults to 292.0
L : float, optional
Value of L, defaults to 0.01
MgADP : float, optional
Value of MgADP, defaults to 0.05
MgATP : float, optional
Value of MgATP, defaults to 9.8
nao : float, optional
Value of nao, defaults to 140.0
offset : float, optional
Value of offset, defaults to 0.0
PCa_b : float, optional
Value of PCa_b, defaults to 8.3757e-05
PCab : float, optional
Value of PCab, defaults to 5.9194e-08
PKNa : float, optional
Value of PKNa, defaults to 0.01833
PNab : float, optional
Value of PNab, defaults to 1.9239e-09
Pnak_b : float, optional
Value of Pnak_b, defaults to 15.4509
qca : float, optional
Value of qca, defaults to 0.167
qna : float, optional
Value of qna, defaults to 0.5224
R : float, optional
Value of R, defaults to 8314.0
rad : float, optional
Value of rad, defaults to 0.0011
T : float, optional
Value of T, defaults to 310.0
tauCa : float, optional
Value of tauCa, defaults to 0.2
tauCl : float, optional
Value of tauCl, defaults to 2.0
tauK : float, optional
Value of tauK, defaults to 2.0
tauNa : float, optional
Value of tauNa, defaults to 2.0
thL : float, optional
Value of thL, defaults to 200.0
tjca : float, optional
Value of tjca, defaults to 72.5
trpnmax : float, optional
Value of trpnmax, defaults to 0.07
vShift : float, optional
Value of vShift, defaults to 0.0
wca : float, optional
Value of wca, defaults to 60000.0
wna : float, optional
Value of wna, defaults to 60000.0
wnaca : float, optional
Value of wnaca, defaults to 5000.0
zca : float, optional
Value of zca, defaults to 2.0
zcl : float, optional
Value of zcl, defaults to -1.0
zk : float, optional
Value of zk, defaults to 1.0
zna : float, optional
Value of zna, defaults to 1.0
class carputils.model.ionic.UCLA_RABIonicModel(*args, **kwargs)

Describes the UCLA_RAB ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
blf_ICaL : float, optional
Value of blf_ICaL, defaults to 1.0
blf_IKr : float, optional
Value of blf_IKr, defaults to 1.0
blf_IKs : float, optional
Value of blf_IKs, defaults to 1.0
blf_INa : float, optional
Value of blf_INa, defaults to 1.0
blf_INaCa : float, optional
Value of blf_INaCa, defaults to 1.0
blf_recov : float, optional
Value of blf_recov, defaults to 1.0
blf_tau_h : float, optional
Value of blf_tau_h, defaults to 1.0
Cao : float, optional
Value of Cao, defaults to 1.8
d_g : float, optional
Value of d_g, defaults to 2.58079
d_taur : float, optional
Value of d_taur, defaults to 30.0
gCa : float, optional
Value of gCa, defaults to 182.0
gK1 : float, optional
Value of gK1, defaults to 0.3
gKr : float, optional
Value of gKr, defaults to 0.0125
gKs : float, optional
Value of gKs, defaults to 0.32
gNa : float, optional
Value of gNa, defaults to 12.0
gNaK : float, optional
Value of gNaK, defaults to 1.5
gss : float, optional
Value of gss
gtof : float, optional
Value of gtof, defaults to 0.11
gtos : float, optional
Value of gtos, defaults to 0.04
K_i : float, optional
Value of K_i, defaults to 140.0
Ko : float, optional
Value of Ko, defaults to 5.4
Na_i : float, optional
Value of Na_i, defaults to 14.01807252
Nao : float, optional
Value of Nao, defaults to 136.0
T : float, optional
Value of T, defaults to 308.0
Vup : float, optional
Value of Vup, defaults to 0.4
class carputils.model.ionic.UCLA_RAB_SCRIonicModel(*args, **kwargs)

Describes the UCLA_RAB_SCR ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
Ca_o : float, optional
Value of Ca_o, defaults to 1.8
CSR : float, optional
Value of CSR, defaults to 1200.0
g_Ca : float, optional
Value of g_Ca, defaults to 0.6
g_K1 : float, optional
Value of g_K1, defaults to 0.3
g_Kr : float, optional
Value of g_Kr, defaults to 0.003
g_Ks : float, optional
Value of g_Ks, defaults to 0.043
g_Na : float, optional
Value of g_Na, defaults to 12.0
g_RyR : float, optional
Value of g_RyR, defaults to 2.25
g_sp : float, optional
Value of g_sp
g_tof : float, optional
Value of g_tof, defaults to 0.1
g_tos : float, optional
Value of g_tos, defaults to 0.04
i_NaCamax : float, optional
Value of i_NaCamax, defaults to 0.3
i_NaKmax : float, optional
Value of i_NaKmax, defaults to 1.5
K_o : float, optional
Value of K_o, defaults to 5.4
Na_o : float, optional
Value of Na_o, defaults to 136.0
rseed : float, optional
Value of rseed, defaults to -1.0
t_SCR : float, optional
Value of t_SCR, defaults to -1.0
v_Na : float, optional
Value of v_Na, defaults to 0.0
v_up : float, optional
Value of v_up, defaults to 0.3
class carputils.model.ionic.WANG_NNRIonicModel(*args, **kwargs)

Describes the WANG_NNR ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
Ca_i_init : float, optional
Value of Ca_i_init, defaults to 0.2049
i_CaL_slowdown : float, optional
Value of i_CaL_slowdown, defaults to 1.0
Ki_init : float, optional
Value of Ki_init, defaults to 136450.0
Nai_init : float, optional
Value of Nai_init, defaults to 21747.0
class carputils.model.ionic.converted_COURTEMANCHEIonicModel(*args, **kwargs)

Describes the converted_COURTEMANCHE ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
blf_i_Kur : float, optional
Value of blf_i_Kur, defaults to 1.0
blf_i_up : float, optional
Value of blf_i_up, defaults to 1.0
Ca_o : float, optional
Value of Ca_o, defaults to 1.8
g_bCa : float, optional
Value of g_bCa, defaults to 0.00113
g_bNa : float, optional
Value of g_bNa, defaults to 0.000674
g_CaL : float, optional
Value of g_CaL, defaults to 0.1238
g_K1 : float, optional
Value of g_K1, defaults to 0.09
g_Kr : float, optional
Value of g_Kr, defaults to 0.0294
g_Ks : float, optional
Value of g_Ks, defaults to 0.129
g_Na : float, optional
Value of g_Na, defaults to 7.8
g_to : float, optional
Value of g_to, defaults to 0.1652
K_o : float, optional
Value of K_o, defaults to 5.4
Na_o : float, optional
Value of Na_o, defaults to 140.0
class carputils.model.ionic.converted_DiFranNobleIonicModel(*args, **kwargs)

Describes the converted_DiFranNoble ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
C : float, optional
Value of C
G_Na : float, optional
Value of G_Na
kNaCa : float, optional
Value of kNaCa, defaults to 0.02
p_to : float, optional
Value of p_to, defaults to 1.0
pCaf : float, optional
Value of pCaf, defaults to 1.0
pFunny : float, optional
Value of pFunny, defaults to 1.0
pK : float, optional
Value of pK, defaults to 1.0
class carputils.model.ionic.converted_LRDII_FIonicModel(*args, **kwargs)

Describes the converted_LRDII_F ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
g_NaK : float, optional
Value of g_NaK, defaults to 1.0
class carputils.model.ionic.converted_MBRDRIonicModel(*args, **kwargs)

Describes the converted_MBRDR ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
APDshorten : float, optional
Value of APDshorten, defaults to 1.0
GNa : float, optional
Value of GNa, defaults to 15.0
Gsi : float, optional
Value of Gsi, defaults to 0.09
class carputils.model.ionic.converted_NYGRENIonicModel(*args, **kwargs)

Describes the converted_NYGREN ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
G_CaB : float, optional
Value of G_CaB, defaults to 0.00157362
G_CaL : float, optional
Value of G_CaL, defaults to 0.135
G_K1 : float, optional
Value of G_K1, defaults to 0.06
G_Kr : float, optional
Value of G_Kr, defaults to 0.01
G_KS : float, optional
Value of G_KS, defaults to 0.02
G_NaB : float, optional
Value of G_NaB, defaults to 0.00121198
G_sus : float, optional
Value of G_sus, defaults to 0.055
G_t : float, optional
Value of G_t, defaults to 0.15
I_NaKmax : float, optional
Value of I_NaKmax, defaults to 1.416506
k_NaCa : float, optional
Value of k_NaCa, defaults to 0.000749684
class carputils.model.ionic.converted_RNCIonicModel(*args, **kwargs)

Describes the converted_RNC ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
Ca_o : float, optional
Value of Ca_o, defaults to 1.8
Cl_o : float, optional
Value of Cl_o, defaults to 132.0
g_bCa : float, optional
Value of g_bCa, defaults to 0.00113
g_bNa : float, optional
Value of g_bNa, defaults to 0.000674
g_CaL : float, optional
Value of g_CaL, defaults to 0.24
g_ClCa : float, optional
Value of g_ClCa, defaults to 0.3
g_K1 : float, optional
Value of g_K1, defaults to 0.15
g_Kr : float, optional
Value of g_Kr, defaults to 0.06984
g_Ks : float, optional
Value of g_Ks, defaults to 0.0561
g_Na : float, optional
Value of g_Na, defaults to 7.8
g_to : float, optional
Value of g_to, defaults to 0.19824
K_o : float, optional
Value of K_o, defaults to 5.4
maxCa_up : float, optional
Value of maxCa_up, defaults to 15.0
maxI_NaCa : float, optional
Value of maxI_NaCa, defaults to 1600.0
maxI_NaK : float, optional
Value of maxI_NaK, defaults to 0.6
maxI_pCa : float, optional
Value of maxI_pCa, defaults to 0.275
maxI_up : float, optional
Value of maxI_up, defaults to 0.005
Na_o : float, optional
Value of Na_o, defaults to 140.0
tau_tr : float, optional
Value of tau_tr, defaults to 180.0
tau_u : float, optional
Value of tau_u, defaults to 8.0
class carputils.model.ionic.converted_TT2IonicModel(*args, **kwargs)

Describes the converted_TT2 ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
Bufc : float, optional
Value of Bufc, defaults to 0.2
Bufsr : float, optional
Value of Bufsr, defaults to 10.0
Bufss : float, optional
Value of Bufss, defaults to 0.4
Cao : float, optional
Value of Cao, defaults to 2.0
CAPACITANCE : float, optional
Value of CAPACITANCE, defaults to 0.185
cell_type : float, optional
Value of cell_type
D_CaL_off : float, optional
Value of D_CaL_off, defaults to 0.0
Fconst : float, optional
Value of Fconst, defaults to 96485.3415
flags : float, optional
Value of flags
GbCa : float, optional
Value of GbCa, defaults to 0.000592
GbNa : float, optional
Value of GbNa, defaults to 0.00029
GCaL : float, optional
Value of GCaL, defaults to 3.98e-05
GK1 : float, optional
Value of GK1, defaults to 5.405
Gkr : float, optional
Value of Gkr, defaults to 0.153
Gks : float, optional
Value of Gks
GNa : float, optional
Value of GNa, defaults to 14.838
GpCa : float, optional
Value of GpCa, defaults to 0.1238
GpK : float, optional
Value of GpK, defaults to 0.0146
Gto : float, optional
Value of Gto
Kbufc : float, optional
Value of Kbufc, defaults to 0.001
Kbufsr : float, optional
Value of Kbufsr, defaults to 0.3
Kbufss : float, optional
Value of Kbufss, defaults to 0.00025
KmCa : float, optional
Value of KmCa, defaults to 1.38
KmK : float, optional
Value of KmK, defaults to 1.0
KmNa : float, optional
Value of KmNa, defaults to 40.0
KmNai : float, optional
Value of KmNai, defaults to 87.5
knaca : float, optional
Value of knaca, defaults to 1000.0
knak : float, optional
Value of knak, defaults to 2.724
Ko : float, optional
Value of Ko, defaults to 5.4
KpCa : float, optional
Value of KpCa, defaults to 0.0005
ksat : float, optional
Value of ksat, defaults to 0.1
Kup : float, optional
Value of Kup, defaults to 0.00025
n : float, optional
Value of n, defaults to 0.35
Nao : float, optional
Value of Nao, defaults to 140.0
pKNa : float, optional
Value of pKNa, defaults to 0.03
Rconst : float, optional
Value of Rconst, defaults to 8314.472
scl_tau_f : float, optional
Value of scl_tau_f, defaults to 1.0
T : float, optional
Value of T, defaults to 310.0
Vc : float, optional
Value of Vc, defaults to 0.016404
Vleak : float, optional
Value of Vleak, defaults to 0.00036
Vmaxup : float, optional
Value of Vmaxup, defaults to 0.006375
Vrel : float, optional
Value of Vrel, defaults to 0.102
Vsr : float, optional
Value of Vsr, defaults to 0.001094
Vss : float, optional
Value of Vss, defaults to 5.468e-05
xr2_off : float, optional
Value of xr2_off, defaults to 0.0
class carputils.model.ionic.converted_UCLA_RABIonicModel(*args, **kwargs)

Describes the converted_UCLA_RAB ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
BASE_Ki : float, optional
Value of BASE_Ki, defaults to 140.0
blf_ICaL : float, optional
Value of blf_ICaL, defaults to 1.0
blf_IKr : float, optional
Value of blf_IKr, defaults to 1.0
blf_IKs : float, optional
Value of blf_IKs, defaults to 1.0
blf_INa : float, optional
Value of blf_INa, defaults to 1.0
blf_INaCa : float, optional
Value of blf_INaCa, defaults to 1.0
Cao : float, optional
Value of Cao
constant_K_i : float, optional
Value of constant_K_i, defaults to 0.0
gK1 : float, optional
Value of gK1, defaults to 0.3
gKr : float, optional
Value of gKr, defaults to 0.0125
gKs : float, optional
Value of gKs
gNa : float, optional
Value of gNa, defaults to 12.0
gss : float, optional
Value of gss
gtof : float, optional
Value of gtof, defaults to 0.11
gtos : float, optional
Value of gtos, defaults to 0.04
Ko : float, optional
Value of Ko
m : float, optional
Value of m
Na_i : float, optional
Value of Na_i
Nao : float, optional
Value of Nao
T : float, optional
Value of T, defaults to 308.0
carputils.model.ionic.get(*args, **kwargs)

Get a class from its key string from keys()

class carputils.model.ionic.hAMrIonicModel(*args, **kwargs)

Describes the hAMr ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
ACh : float, optional
Value of ACh, defaults to 1e-24
blf_i_di : float, optional
Value of blf_i_di, defaults to 1.0
blf_i_NaCa : float, optional
Value of blf_i_NaCa, defaults to 1.0
blf_i_rel : float, optional
Value of blf_i_rel, defaults to 1.0
blf_i_tr : float, optional
Value of blf_i_tr, defaults to 1.0
Cm : float, optional
Value of Cm, defaults to 50.0
g_B_Ca : float, optional
Value of g_B_Ca, defaults to 0.078681
g_B_Na : float, optional
Value of g_B_Na, defaults to 0.060599
g_Ca_L : float, optional
Value of g_Ca_L, defaults to 6.75
g_K1 : float, optional
Value of g_K1, defaults to 3.1
g_Kr : float, optional
Value of g_Kr, defaults to 0.5
g_Ks : float, optional
Value of g_Ks, defaults to 1.0
g_kur : float, optional
Value of g_kur, defaults to 2.25
g_t : float, optional
Value of g_t, defaults to 8.25
i_CaP_max : float, optional
Value of i_CaP_max, defaults to 4.0
i_NaK_max : float, optional
Value of i_NaK_max, defaults to 68.55
I_up_max : float, optional
Value of I_up_max, defaults to 2800.0
P_ACh : float, optional
Value of P_ACh, defaults to 1.0
P_Na : float, optional
Value of P_Na, defaults to 0.0018
phi_Na_en : float, optional
Value of phi_Na_en, defaults to -1.68
carputils.model.ionic.keys()

Return a list of string keys to be used with get()

class carputils.model.ionic.koivumakiIonicModel(*args, **kwargs)

Describes the koivumaki ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
base_phos : float, optional
Value of base_phos, defaults to 0.1
cAF_cpumps : float, optional
Value of cAF_cpumps, defaults to 1.0
cAF_lcell : float, optional
Value of cAF_lcell, defaults to 1.0
cAF_RyR : float, optional
Value of cAF_RyR, defaults to 1.0
g_B_Ca : float, optional
Value of g_B_Ca, defaults to 8.4e-05
g_B_Na : float, optional
Value of g_B_Na, defaults to 6.0599e-05
g_Ca_L : float, optional
Value of g_Ca_L, defaults to 0.007
g_K1 : float, optional
Value of g_K1, defaults to 0.0029
g_Kr : float, optional
Value of g_Kr, defaults to 0.0034
g_Ks : float, optional
Value of g_Ks, defaults to 0.000175
g_sus : float, optional
Value of g_sus, defaults to 0.00225
g_t : float, optional
Value of g_t, defaults to 0.0011
gNa : float, optional
Value of gNa, defaults to 0.558
gNaL : float, optional
Value of gNaL, defaults to 0.000423
k_NaCa : float, optional
Value of k_NaCa, defaults to 0.008433945
PLB_SERCA_ratio : float, optional
Value of PLB_SERCA_ratio, defaults to 1.0
SLN_SERCA_ratio : float, optional
Value of SLN_SERCA_ratio, defaults to 1.0
class carputils.model.ionic.koivumaki_newINaIonicModel(*args, **kwargs)

Describes the koivumaki_newINa ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
cAF_cpumps : float, optional
Value of cAF_cpumps
cAF_g_f : float, optional
Value of cAF_g_f, defaults to 1.0
cAF_gCaL : float, optional
Value of cAF_gCaL
cAF_gK1 : float, optional
Value of cAF_gK1
cAF_gKCa : float, optional
Value of cAF_gKCa
cAF_gKs : float, optional
Value of cAF_gKs
cAF_gNa : float, optional
Value of cAF_gNa
cAF_gsus : float, optional
Value of cAF_gsus
cAF_gt : float, optional
Value of cAF_gt
cAF_kNaCa : float, optional
Value of cAF_kNaCa
cAF_lcell : float, optional
Value of cAF_lcell
cAF_phos : float, optional
Value of cAF_phos
cAF_PLB : float, optional
Value of cAF_PLB
cAF_RyR : float, optional
Value of cAF_RyR
cAF_SLN : float, optional
Value of cAF_SLN
flags : float, optional
Value of flags
mode : float, optional
Value of mode
class carputils.model.ionic.mMSIonicModel(*args, **kwargs)

Describes the mMS ionic model

Args:
IDs : list of int
The element IDs to be included in this material region
name : str
The name of the model material region
a_crit : float, optional
Value of a_crit, defaults to 0.13
tau_close : float, optional
Value of tau_close, defaults to 150.0
tau_in : float, optional
Value of tau_in, defaults to 0.3
tau_open : float, optional
Value of tau_open, defaults to 120.0
tau_out : float, optional
Value of tau_out, defaults to 5.0
V_gate : float, optional
Value of V_gate, defaults to 0.13
V_max : float, optional
Value of V_max, defaults to 1.0
V_min : float, optional
Value of V_min, defaults to 0.0
carputils.model.ionic.summary(indent=2, ncolumns=4, padding=2)

Return a string summarizing the models and their parameters