PyMeshTool Documentation

Citation

Gsell, Matthias A.F. and Klöckl, Benedikt A. and Neic, Aurel and Mautner, Benedikt and Augustin, Christoph M. and Zappon, Elena and Plank, Gernot, PyMeshTool - A framework for building efficient automated image-based anatomical twinning workflows in Python. Available at SSRN: https://ssrn.com/abstract=5745628 or http://dx.doi.org/10.2139/ssrn.5745628

Installation

PyMeshTool is a Python module that provides bindings to MeshTool. PyMeshTool implements interfaces to the mesh and image structures from MeshTool through the Mesh and Image class. Each class also provides interfaces to the MeshTool modes implemented as class methods. The PyPI package can be downloaded or installed from the PyPi server or by running

pip install pymeshtool

in your terminal. Run

pip install --upgrade pymeshtool

to upgrade an existing installation.

API Reference:

• pymeshtool
  • create_image()
  • create_mesh()
  • get_max_par_threads()
  • get_meshtool_git_info()
  • get_num_par_threads()
  • load_fibers()
  • load_points()
  • load_vtx()
  • save_fibers()
  • save_points()
  • save_vtx()
  • set_num_par_threads()
  • Mesh
    • Mesh.element_tags
    • Mesh.fibers
    • Mesh.num_elements
    • Mesh.num_fibers
    • Mesh.num_points
    • Mesh.points
    • Mesh.__deepcopy__()
    • Mesh.__init__()
    • Mesh.apply_split()
    • Mesh.clean_topology()
    • Mesh.clear_full_connectivity()
    • Mesh.compute_full_connectivity()
    • Mesh.connected_vtx_components()
    • Mesh.correspondence()
    • Mesh.extract_element_nodes()
    • Mesh.extract_elements()
    • Mesh.extract_gradient()
    • Mesh.extract_mesh()
    • Mesh.extract_myocard()
    • Mesh.extract_surface()
    • Mesh.extract_unreachable()
    • Mesh.extract_vtx()
    • Mesh.extract_vtxhalo()
    • Mesh.generate_distancefield()
    • Mesh.generate_fibers()
    • Mesh.generate_split()
    • Mesh.get_element_sizes()
    • Mesh.get_elements_in_selection()
    • Mesh.has_full_connectivity()
    • Mesh.interpolate_clouddata()
    • Mesh.interpolate_elem2node()
    • Mesh.interpolate_node2elem()
    • Mesh.interpolate_nodes()
    • Mesh.is_surface_mesh()
    • Mesh.merge()
    • Mesh.query_bbox()
    • Mesh.query_curvature()
    • Mesh.query_edges()
    • Mesh.query_idx()
    • Mesh.query_idxlist()
    • Mesh.query_quality()
    • Mesh.query_tags()
    • Mesh.refine_uniformly()
    • Mesh.rotate()
    • Mesh.save()
    • Mesh.scale()
    • Mesh.smooth_mesh()
    • Mesh.translate()
  • Mapping
    • Mapping.element_map
    • Mapping.mesh
    • Mapping.node_map
    • Mapping.submesh
    • Mapping.__matmul__()
    • Mapping.insert_back()
    • Mapping.insert_data()
    • Mapping.map_selection()
    • Mapping.prolongate()
    • Mapping.restrict()
    • Mapping.save()
  • Image
    • Image.data_type
    • Image.dtype
    • Image.origin
    • Image.shape
    • Image.voxel_size
    • Image.voxels
    • Image.__deepcopy__()
    • Image.__init__()
    • Image.change_type()
    • Image.crop()
    • Image.extract_mesh()
    • Image.extrude()
    • Image.resample()
    • Image.save()
  • PyMeshToolError
  • MeshInputFormat
  • MeshOutputFormat
  • MeshElementType
  • MeshClouddataInterpolationMode
  • MeshExtractUnreachableMode
  • ImageDType
  • ImageExtrusionMode

Examples:

• Benchmark

Other:

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