Conduction Velocity Purkinje
Module: devtests.bidomain.cv_purkinje.run
Section author: Anton Prassl <anton.prassl@medunigraz.at>
This is an example that shall help tuning related parameters to obtain the desired velocity in the purkinje network.
This example defines a minimalistic purkinje network attached on top of a thin cuboid on the domain (units in microns):
And applies an electrical HIS stimulus on the upper side of the cuboid:
Conduction velocity is measured 500um after the cable begin and 500um before the cable end.
Following optional arguments with their default values are available:
./run.py --sourceModel = monodomain
--propagation = R-D
--dx3D = 200.
--resist = 100.
--cond = 0.0006
--effcond = 1
--dx1D = 100.
--tend = 10.
--suffix = ''
As with other examples, add the --visualize
option to automatically load
the results in meshalyzer:
./run.py --visualize
Generate a HIS activation sequence within a thin cuboid and compare against reference.
Checks:
Last run: 2023-12-05 00:08:46.463760, revision {‘base’: ‘f172baea’}, dependency revisions {PT_C: 31642c1e,cvsys: 69164767,eikonal: 5fbbfda3,elasticity: edfdcbb3}
Runtime: 0:00:09.778854
**** ALL FAILED ****
FAIL max_error(vm.igb): 16.0076847076416
Last passed: No passes found in history (earliest 2023-07-01 00:08:57.976244)
Generate a HIS activation sequence within a thin cuboid and compare against reference.
Checks:
Last run: 2023-12-05 00:08:56.282170, revision {‘base’: ‘f172baea’}, dependency revisions {PT_C: 31642c1e,cvsys: 69164767,eikonal: 5fbbfda3,elasticity: edfdcbb3}
Runtime: 0:00:07.801674
**** ALL FAILED ****
FAIL max_error(vm.igb): 16.0076847076416
Last passed: No passes found in history (earliest 2023-07-01 00:09:07.764823)
Generate a HIS activation sequence within a thin cuboid and compare against reference.
Checks:
Last run: 2023-12-05 00:09:04.123171, revision {‘base’: ‘f172baea’}, dependency revisions {PT_C: 31642c1e,cvsys: 69164767,eikonal: 5fbbfda3,elasticity: edfdcbb3}
Runtime: 0:00:12.352936
ALL PASSED
PASS max_error(vm.igb): 0.0
Generate a HIS activation sequence within a thin cuboid and compare against reference.
Checks:
Last run: 2023-12-05 00:09:16.508744, revision {‘base’: ‘f172baea’}, dependency revisions {PT_C: 31642c1e,cvsys: 69164767,eikonal: 5fbbfda3,elasticity: edfdcbb3}
Runtime: 0:00:10.300007
ALL PASSED
PASS max_error(vm.igb): 0.002742767333984375
Generate a HIS activation sequence within a thin cuboid and compare against reference.
Tags: FAST PARALLEL EIKONAL PURKINJE
Checks:
Last run: 2023-12-05 00:09:26.845717, revision {‘base’: ‘f172baea’}, dependency revisions {PT_C: 31642c1e,cvsys: 69164767,eikonal: 5fbbfda3,elasticity: edfdcbb3}
Runtime: 0:00:12.285804
ALL PASSED
PASS max_error(vm.igb): 0.0
Generate a HIS activation sequence within a thin cuboid and compare against reference.
Tags: FAST PARALLEL EIKONAL PURKINJE
Checks:
Last run: 2023-12-05 00:09:39.170162, revision {‘base’: ‘f172baea’}, dependency revisions {PT_C: 31642c1e,cvsys: 69164767,eikonal: 5fbbfda3,elasticity: edfdcbb3}
Runtime: 0:00:10.267819
ALL PASSED
PASS max_error(vm.igb): 5.340576171875e-05