LeadField

Module: devtests.bidomain.leadfield.run

Section author: Gernot Plank <gernot.plank@medunigraz.at>,Anton Prassl <anton.prassl@medunigraz.at>

This is a simple example to demonstrate the leadfield approach.

Problem Setup

../../_images/LeadField_Setup.png

Usage

As with other examples, add the --visualize option to automatically load the results in meshalyzer:

./run.py --tend 20 --sourceModel bidomain --visualize

Tests

serial_bd_RD_petsc

Tags: MEDIUM BIDOMAIN SERIAL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2024-02-29 00:13:18.862524, revision {‘base’: ‘cbf8efd0’}, dependency revisions {PT_C: 31642c1e,cvsys: 593686bc,eikonal: 5fbbfda3,elasticity: 4d92ddfc}

Runtime: 0:12:51.963282
ALL PASSED
  PASS max_error(phie.igb): 0.0
  PASS max_error(lfEGMs.dat): 0.0

serial_bd_RE_petsc

Tags: MEDIUM BIDOMAIN EIKONAL SERIAL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2024-02-29 00:26:10.913985, revision {‘base’: ‘cbf8efd0’}, dependency revisions {PT_C: 31642c1e,cvsys: 593686bc,eikonal: 5fbbfda3,elasticity: 4d92ddfc}

Runtime: 0:03:45.946104
ALL PASSED
  PASS max_error(phie.igb): 0.0
  PASS max_error(lfEGMs.dat): 0.0

serial_bd_RD_pt

Tags: MEDIUM BIDOMAIN SERIAL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2024-02-29 00:29:56.947601, revision {‘base’: ‘cbf8efd0’}, dependency revisions {PT_C: 31642c1e,cvsys: 593686bc,eikonal: 5fbbfda3,elasticity: 4d92ddfc}

Runtime: 0:07:50.011329
ALL PASSED
  PASS max_error(phie.igb): 3.814697265625e-06
  PASS max_error(lfEGMs.dat): 1.0000000000287557e-06

serial_bd_RE_pt

Tags: MEDIUM BIDOMAIN EIKONAL SERIAL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2024-02-29 00:37:47.047477, revision {‘base’: ‘cbf8efd0’}, dependency revisions {PT_C: 31642c1e,cvsys: 593686bc,eikonal: 5fbbfda3,elasticity: 4d92ddfc}

Runtime: 0:02:17.209119
ALL PASSED
  PASS max_error(phie.igb): 3.814697265625e-06
  PASS max_error(lfEGMs.dat): 1.0000000000287557e-06

serial_pbd_RD_petsc

Tags: MEDIUM PSEUDO_BIDOMAIN SERIAL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2024-02-29 00:40:04.346937, revision {‘base’: ‘cbf8efd0’}, dependency revisions {PT_C: 31642c1e,cvsys: 593686bc,eikonal: 5fbbfda3,elasticity: 4d92ddfc}

Runtime: 0:01:10.879515
ALL PASSED
  PASS max_error(phie.igb): 0.0
  PASS max_error(lfEGMs.dat): 0.0

serial_pbd_RE_petsc

Tags: MEDIUM PSEUDO_BIDOMAIN EIKONAL SERIAL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2024-02-29 00:41:15.317188, revision {‘base’: ‘cbf8efd0’}, dependency revisions {PT_C: 31642c1e,cvsys: 593686bc,eikonal: 5fbbfda3,elasticity: 4d92ddfc}

Runtime: 0:00:59.223264
ALL PASSED
  PASS max_error(phie.igb): 0.0
  PASS max_error(lfEGMs.dat): 0.0

serial_pbd_RD_pt

Tags: MEDIUM PSEUDO_BIDOMAIN SERIAL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2024-02-29 00:42:14.627589, revision {‘base’: ‘cbf8efd0’}, dependency revisions {PT_C: 31642c1e,cvsys: 593686bc,eikonal: 5fbbfda3,elasticity: 4d92ddfc}

Runtime: 0:00:46.964553
ALL PASSED
  PASS max_error(phie.igb): 3.814697265625e-06
  PASS max_error(lfEGMs.dat): 1.0000000000287557e-07

serial_pbd_RE_pt

Tags: MEDIUM PSEUDO_BIDOMAIN EIKONAL SERIAL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2024-02-29 00:43:01.675339, revision {‘base’: ‘cbf8efd0’}, dependency revisions {PT_C: 31642c1e,cvsys: 593686bc,eikonal: 5fbbfda3,elasticity: 4d92ddfc}

Runtime: 0:00:32.949549
ALL PASSED
  PASS max_error(phie.igb): 3.814697265625e-06
  PASS max_error(lfEGMs.dat): 1.0000000000287557e-06

serial_md_RD_petsc

Tags: MEDIUM MONODOMAIN SERIAL

Checks:

  • Compare against stored reference: max_error(lfEGMs.dat)
  • Compare against stored reference: max_error(phie_recv.igb)

Last run: 2024-02-29 00:43:34.712245, revision {‘base’: ‘cbf8efd0’}, dependency revisions {PT_C: 31642c1e,cvsys: 593686bc,eikonal: 5fbbfda3,elasticity: 4d92ddfc}

Runtime: 0:00:37.519556
ALL PASSED
  PASS max_error(lfEGMs.dat): 0.0
  PASS max_error(phie_recv.igb): 0.0

serial_md_RE_petsc

Tags: MEDIUM MONODOMAIN EIKONAL SERIAL

Checks:

  • Compare against stored reference: max_error(lfEGMs.dat)
  • Compare against stored reference: max_error(phie_recv.igb)

Last run: 2024-02-29 00:44:12.264768, revision {‘base’: ‘cbf8efd0’}, dependency revisions {PT_C: 31642c1e,cvsys: 593686bc,eikonal: 5fbbfda3,elasticity: 4d92ddfc}

Runtime: 0:00:25.408201
ALL PASSED
  PASS max_error(lfEGMs.dat): 0.0
  PASS max_error(phie_recv.igb): 0.0

serial_md_RD_pt

Tags: MEDIUM MONODOMAIN SERIAL

Checks:

  • Compare against stored reference: max_error(lfEGMs.dat)
  • Compare against stored reference: max_error(phie_recv.igb)

Last run: 2024-02-29 00:44:37.703898, revision {‘base’: ‘cbf8efd0’}, dependency revisions {PT_C: 31642c1e,cvsys: 593686bc,eikonal: 5fbbfda3,elasticity: 4d92ddfc}

Runtime: 0:00:31.768899
ALL PASSED
  PASS max_error(lfEGMs.dat): 1.0000000000287557e-07
  PASS max_error(phie_recv.igb): 1.4901161193847656e-08

serial_md_RE_pt

Tags: MEDIUM MONODOMAIN EIKONAL SERIAL

Checks:

  • Compare against stored reference: max_error(lfEGMs.dat)
  • Compare against stored reference: max_error(phie_recv.igb)

Last run: 2024-02-29 00:45:09.508469, revision {‘base’: ‘cbf8efd0’}, dependency revisions {PT_C: 31642c1e,cvsys: 593686bc,eikonal: 5fbbfda3,elasticity: 4d92ddfc}

Runtime: 0:00:16.655200
ALL PASSED
  PASS max_error(lfEGMs.dat): 1.0000000000287557e-06
  PASS max_error(phie_recv.igb): 3.725290298461914e-09

parallel_bd_RD_petsc

Tags: MEDIUM BIDOMAIN PARALLEL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2024-02-29 00:45:26.200337, revision {‘base’: ‘cbf8efd0’}, dependency revisions {PT_C: 31642c1e,cvsys: 593686bc,eikonal: 5fbbfda3,elasticity: 4d92ddfc}

Runtime: 0:03:30.790593
ALL PASSED
  PASS max_error(phie.igb): 3.814697265625e-06
  PASS max_error(lfEGMs.dat): 9.18467e-14

parallel_bd_RE_petsc

Tags: MEDIUM BIDOMAIN EIKONAL PARALLEL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2024-02-29 00:48:57.067474, revision {‘base’: ‘cbf8efd0’}, dependency revisions {PT_C: 31642c1e,cvsys: 593686bc,eikonal: 5fbbfda3,elasticity: 4d92ddfc}

Runtime: 0:01:05.026854
ALL PASSED
  PASS max_error(phie.igb): 3.814697265625e-06
  PASS max_error(lfEGMs.dat): 9.18467e-14

parallel_bd_RD_pt

Tags: MEDIUM BIDOMAIN PARALLEL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2024-02-29 00:50:02.183235, revision {‘base’: ‘cbf8efd0’}, dependency revisions {PT_C: 31642c1e,cvsys: 593686bc,eikonal: 5fbbfda3,elasticity: 4d92ddfc}

Runtime: 0:02:39.258685
ALL PASSED
  PASS max_error(phie.igb): 3.814697265625e-06
  PASS max_error(lfEGMs.dat): 1.0000000000287557e-07

parallel_bd_RE_pt

Tags: MEDIUM BIDOMAIN EIKONAL PARALLEL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2024-02-29 00:52:41.517983, revision {‘base’: ‘cbf8efd0’}, dependency revisions {PT_C: 31642c1e,cvsys: 593686bc,eikonal: 5fbbfda3,elasticity: 4d92ddfc}

Runtime: 0:00:47.042569
ALL PASSED
  PASS max_error(phie.igb): 3.814697265625e-06
  PASS max_error(lfEGMs.dat): 1.0000000000114084e-07

parallel_pbd_RD_petsc

Tags: MEDIUM PSEUDO_BIDOMAIN PARALLEL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2024-02-29 00:53:28.649442, revision {‘base’: ‘cbf8efd0’}, dependency revisions {PT_C: 31642c1e,cvsys: 593686bc,eikonal: 5fbbfda3,elasticity: 4d92ddfc}

Runtime: 0:00:23.075987
ALL PASSED
  PASS max_error(phie.igb): 3.814697265625e-06
  PASS max_error(lfEGMs.dat): 9.18467e-14

parallel_pbd_RE_petsc

Tags: MEDIUM PSEUDO_BIDOMAIN EIKONAL PARALLEL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2024-02-29 00:53:51.803696, revision {‘base’: ‘cbf8efd0’}, dependency revisions {PT_C: 31642c1e,cvsys: 593686bc,eikonal: 5fbbfda3,elasticity: 4d92ddfc}

Runtime: 0:00:19.030928
ALL PASSED
  PASS max_error(phie.igb): 3.814697265625e-06
  PASS max_error(lfEGMs.dat): 9.18467e-14

parallel_pbd_RD_pt

Tags: MEDIUM PSEUDO_BIDOMAIN PARALLEL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2024-02-29 00:54:10.924764, revision {‘base’: ‘cbf8efd0’}, dependency revisions {PT_C: 31642c1e,cvsys: 593686bc,eikonal: 5fbbfda3,elasticity: 4d92ddfc}

Runtime: 0:00:15.584122
ALL PASSED
  PASS max_error(phie.igb): 3.814697265625e-06
  PASS max_error(lfEGMs.dat): 9.999999999621423e-06

parallel_pbd_RE_pt

Tags: MEDIUM PSEUDO_BIDOMAIN EIKONAL PARALLEL

Checks:

  • Compare against stored reference: max_error(phie.igb)
  • Compare against stored reference: max_error(lfEGMs.dat)

Last run: 2024-02-29 00:54:26.585976, revision {‘base’: ‘cbf8efd0’}, dependency revisions {PT_C: 31642c1e,cvsys: 593686bc,eikonal: 5fbbfda3,elasticity: 4d92ddfc}

Runtime: 0:00:11.352277
ALL PASSED
  PASS max_error(phie.igb): 3.814697265625e-06
  PASS max_error(lfEGMs.dat): 1.0000000000287557e-06

parallel_md_RD_petsc

Tags: MEDIUM MONODOMAIN PARALLEL

Checks:

  • Compare against stored reference: max_error(lfEGMs.dat)
  • Compare against stored reference: max_error(phie_recv.igb)

Last run: 2024-02-29 00:54:38.024569, revision {‘base’: ‘cbf8efd0’}, dependency revisions {PT_C: 31642c1e,cvsys: 593686bc,eikonal: 5fbbfda3,elasticity: 4d92ddfc}

Runtime: 0:00:13.730248
ALL PASSED
  PASS max_error(lfEGMs.dat): 9.18467e-14
  PASS max_error(phie_recv.igb): 7.543743190882579e-15

parallel_md_RE_petsc

Tags: MEDIUM MONODOMAIN EIKONAL PARALLEL

Checks:

  • Compare against stored reference: max_error(lfEGMs.dat)
  • Compare against stored reference: max_error(phie_recv.igb)

Last run: 2024-02-29 00:54:51.784998, revision {‘base’: ‘cbf8efd0’}, dependency revisions {PT_C: 31642c1e,cvsys: 593686bc,eikonal: 5fbbfda3,elasticity: 4d92ddfc}

Runtime: 0:00:09.728527
ALL PASSED
  PASS max_error(lfEGMs.dat): 9.18467e-14
  PASS max_error(phie_recv.igb): 3.725290298461914e-09

parallel_md_RD_pt

Tags: MEDIUM MONODOMAIN PARALLEL

Checks:

  • Compare against stored reference: max_error(lfEGMs.dat)
  • Compare against stored reference: max_error(phie_recv.igb)

Last run: 2024-02-29 00:55:01.547610, revision {‘base’: ‘cbf8efd0’}, dependency revisions {PT_C: 31642c1e,cvsys: 593686bc,eikonal: 5fbbfda3,elasticity: 4d92ddfc}

Runtime: 0:00:11.133607
ALL PASSED
  PASS max_error(lfEGMs.dat): 9.999999999621423e-06
  PASS max_error(phie_recv.igb): 1.4901161193847656e-08

parallel_md_RE_pt

Tags: MEDIUM MONODOMAIN EIKONAL PARALLEL

Checks:

  • Compare against stored reference: max_error(lfEGMs.dat)
  • Compare against stored reference: max_error(phie_recv.igb)

Last run: 2024-02-29 00:55:12.710728, revision {‘base’: ‘cbf8efd0’}, dependency revisions {PT_C: 31642c1e,cvsys: 593686bc,eikonal: 5fbbfda3,elasticity: 4d92ddfc}

Runtime: 0:00:06.828200
ALL PASSED
  PASS max_error(lfEGMs.dat): 1.0000000000287557e-06
  PASS max_error(phie_recv.igb): 3.725290298461914e-09