Phie Recovery Purkinje Activation
Module: devtests.bidomain.purk_phierecv.run
Section author: Anton Prassl <anton.prassl@medunigraz.at>
Test phie recovery in a slab with attached purkinje network.
This example defines a minimalistic purkinje network attached on top of a thin cuboid on the domain (units in microns):
Run a bidomain simulation in a His stimulated portion of tissue. Restart the
same simulation and deactivate the purkinje system. Recover signals
at the bath box corners similar to the setting of a clinical ecg recording.
Investigate the influence of the purkinje system on the ecg recordings.
As with other examples, add the --visualize
option to automatically load
the results in meshalyzer:
./run.py --visualize
HIS activation within a thin cuboid. Write a statefile at and continue simulation until
. Restart bidomain simulation at
and finish it at
. Recover
at right/left arm and left leg.
Checks:
Last run: 2023-12-05 00:58:21.225760, revision {‘base’: ‘f172baea’}, dependency revisions {PT_C: 31642c1e,cvsys: 69164767,eikonal: 5fbbfda3,elasticity: edfdcbb3}
Runtime: 0:02:18.626629
**** 3/5 FAILED ****
FAIL max_error(phie.igb): 0.01559758186340332
FAIL max_error(phie_recovery.igb): 0.06257474422454834
FAIL max_error(restart/phie.igb): 0.01187598705291748
PASS max_error(restart/phie_recovery.igb): 2.214685082435608e-06
PASS max_error(restart/postprocess/phie_recovery.igb): 1.7369166016578674e-06
Last passed: No passes found in history (earliest 2023-07-01 00:57:47.346814)
Same setting as in single core mode above, but now using 4 cores. Compare against single core results.
Tags: MEDIUM PURKINJE PARALLEL
Checks:
Last run: 2023-12-05 01:00:40.081639, revision {‘base’: ‘f172baea’}, dependency revisions {PT_C: 31642c1e,cvsys: 69164767,eikonal: 5fbbfda3,elasticity: edfdcbb3}
Runtime: 0:00:41.148281
**** 3/5 FAILED ****
FAIL max_error(phie.igb): 0.01559758186340332
FAIL max_error(phie_recovery.igb): 0.06257474422454834
FAIL max_error(restart/phie.igb): 0.01187598705291748
PASS max_error(restart/phie_recovery.igb): 2.214685082435608e-06
PASS max_error(restart/postprocess/phie_recovery.igb): 1.7369166016578674e-06
Last passed: No passes found in history (earliest 2023-07-01 01:00:05.229896)