Phie Recovery Purkinje Activation
Module: devtests.bidomain.purk_phierecv.run
Section author: Anton Prassl <anton.prassl@medunigraz.at>
Test phie recovery in a slab with attached purkinje network.
This example defines a minimalistic purkinje network attached on top of a thin cuboid on the domain (units in microns):
Run a bidomain simulation in a His stimulated portion of tissue. Restart the
same simulation and deactivate the purkinje system. Recover signals
at the bath box corners similar to the setting of a clinical ecg recording.
Investigate the influence of the purkinje system on the ecg recordings.
As with other examples, add the --visualize
option to automatically load
the results in meshalyzer:
./run.py --visualize
HIS activation within a thin cuboid. Write a statefile at and continue simulation until
. Restart bidomain simulation at
and finish it at
. Recover
at right/left arm and left leg.
Checks:
Last run: 2023-03-31 00:57:56.068241, revision {‘base’: ‘2ea5554f’}, dependency revisions {PT_C: 31642c1e,cvsys: b052f3a9,eikonal: b58be0de,elasticity: fadd9ded}
Runtime: 0:02:16.838507
**** 3/5 FAILED ****
FAIL max_error(phie.igb): 0.01559758186340332
FAIL max_error(phie_recovery.igb): 0.06257474422454834
FAIL max_error(restart/phie.igb): 0.01187598705291748
PASS max_error(restart/phie_recovery.igb): 2.214685082435608e-06
PASS max_error(restart/postprocess/phie_recovery.igb): 1.7369166016578674e-06
Last passed: 2022-11-15 00:59:49.998790, revision {‘base’: ‘62ff040c’}, dependency revisions {PT_C: 31642c1e,cvsys: 2ff71113,eikonal: b58be0de,elasticity: ebfd6af4}
Same setting as in single core mode above, but now using 4 cores. Compare against single core results.
Tags: MEDIUM PURKINJE PARALLEL
Checks:
Last run: 2023-03-31 01:00:13.112808, revision {‘base’: ‘2ea5554f’}, dependency revisions {PT_C: 31642c1e,cvsys: b052f3a9,eikonal: b58be0de,elasticity: fadd9ded}
Runtime: 0:00:41.948267
**** 3/5 FAILED ****
FAIL max_error(phie.igb): 0.01559758186340332
FAIL max_error(phie_recovery.igb): 0.06257474422454834
FAIL max_error(restart/phie.igb): 0.01187598705291748
PASS max_error(restart/phie_recovery.igb): 2.214685082435608e-06
PASS max_error(restart/postprocess/phie_recovery.igb): 1.7369166016578674e-06
Last passed: 2022-11-15 01:02:09.485678, revision {‘base’: ‘62ff040c’}, dependency revisions {PT_C: 31642c1e,cvsys: 2ff71113,eikonal: b58be0de,elasticity: ebfd6af4}